Pairwise Alignments

Query, 401 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., Multidrug resistance transporter, Bcr/CflA family from Variovorax sp. SCN45

 Score =  145 bits (366), Expect = 2e-39
 Identities = 113/392 (28%), Positives = 182/392 (46%), Gaps = 31/392 (7%)

Query: 20  IVLGALGALTPLAIDMYLPAMPTIARDFGVNAGAVQITLTAYTAGFAIGQLLHGPLADSF 79
           ++L  L A  P+A D YLPA+P IA++ G    +   +LT +   F   QLL GPLAD F
Sbjct: 17  LLLPLLLAAQPVATDSYLPALPAIAKELG----SASTSLTLFVLAFGFAQLLCGPLADRF 72

Query: 80  GRRPVMLCGIFLFGIAAMVSATTNGIEALTYIRAAQGFAGAAAAVVIQAVVRDMFDREDF 139
           GRRPV+L G+  + +AA+  A  + +  L   RA QGF+ AA  V  +A VRD++   + 
Sbjct: 73  GRRPVLLAGLGCYVLAALGGAFADSVALLAGWRALQGFSMAAILVCSRAAVRDLYPAHEG 132

Query: 140 ARAMSFVTLVVTLAPLVAPMIGGHLAIWFGWRSIFWVLALFAALVIAMVMWKIPETLSPE 199
              M+     + +  L+AP++G  L    GWR +   +A++A+++ AM  +   ET  P 
Sbjct: 133 PHVMARGLTGLGVVGLLAPLLGAWLVQGAGWRWVMVAMAVYASVLFAMCWYSFAETRKPM 192

Query: 200 NRQPLRF-RSTMRNYFDLCKNPVAMGLIFSGAFSFAGMFAFLTAGAFVYIDIYGVSPDGF 258
               L   R + R  F   ++  A   +   A ++ G+F FL     VYI   G SP  +
Sbjct: 193 GEDGLSAPRGSTRTVF-ASRSFRAWASV--AASTYGGLFCFLLLSPMVYIGYLGWSPAWY 249

Query: 259 GYLFGLNIVAMIALTTINGRFVKKIGSHNMLRFALFLQLMAGIGLFVSWVLDWGLW---- 314
           G++     +  I  TT+    +++ G    +R    L +   +      +   G W    
Sbjct: 250 GWIPAGGSLVYIFSTTMCRTLLRRYGPVRTVRLGASLSITGAV------IQALGCWLMPL 303

Query: 315 GTVPFVVLFVGTISTIGSN-----SMGLLLSKYPRMAGTASSLAG----TLRFGTGSIIG 365
             VP  +LF   +  +G            +   P +AG A S +G     + F  G +  
Sbjct: 304 SAVP--LLFGHAVYCLGHGIHQPCGQAGAVGDLPHLAGRAVSWSGFGMMMVAFCVGQLAA 361

Query: 366 AVVAALPGTETWPMI--FVMAACSVLSGAFYW 395
             V A      WPM+   ++A  S+++ AF+W
Sbjct: 362 RFVDADYSYGAWPMVVPMLLAGISLMAIAFFW 393