Pairwise Alignments

Query, 401 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., multidrug effflux MFS transporter from Pseudomonas fluorescens SBW25

 Score =  196 bits (499), Expect = 8e-55
 Identities = 116/385 (30%), Positives = 202/385 (52%), Gaps = 5/385 (1%)

Query: 18  LYIVLGALGALTPLAIDMYLPAMPTIARDFGVNAGAVQITLTAYTAGFAIGQLLHGPLAD 77
           L ++LG + A+ P AID+YLPA+PT+      +   VQ++LT +     + QL +GP++D
Sbjct: 8   LALLLGLITAVGPFAIDIYLPALPTLGASLQASPALVQMSLTVFFVIIGVCQLFYGPISD 67

Query: 78  SFGRRPVMLCGIFLFGIAAMVSATTNGIEALTYIRAAQGFAGAAAAVVIQAVVRDMFDRE 137
            FGR+P +  G+ +F +A++  A    IE+L   RA Q F   A  V+ +A+VRD++   
Sbjct: 68  VFGRKPPIYAGLVIFAVASVGCALAPTIESLIAFRALQAFGACAGMVIPRAIVRDLYTGH 127

Query: 138 DFARAMSFVTLVVTLAPLVAPMIGGHLAIWFGWRSIFWVLALFAALVIAMVMWKIPETLS 197
           + A+ M+ + LV++++P++AP+ G  +   + WR +F VLA+ A   + M + ++PET  
Sbjct: 128 EAAKLMALLMLVMSVSPILAPLAGSLVIALWSWREVFAVLAVVAVACLVMTIVQLPETHP 187

Query: 198 PENRQPLRFRSTMRNYFDLCKNPVAMGLIFSGAFSFAGMFAFLTAGAFVYIDIYGVSPDG 257
            E R      +   +Y  L ++PV +GL     F  A  F F+ +  FVYI+ YG++P  
Sbjct: 188 AERRLGKTLGNAFSSYGALLRDPVFIGLSVVCGFGLATFFVFIGSAPFVYIEHYGLTPTQ 247

Query: 258 FGYLFGLNIVAMIALTTINGRFVKKIGSHNMLRFAL--FLQLMAGIGLFVSWVLDWGLWG 315
           F   F LN  +  A++ +  R   + G   ++R ++     +MA +     WV    L  
Sbjct: 248 FSLGFALNAASFFAMSQLTARLSARFGLAPLIRGSVVAVAAVMAVLATTTLWVDSLALMM 307

Query: 316 TVPFVVLFVGTISTIGSNSMGLLLSKYPRMAGTASSLAGTLRFGTGSIIGAVVAALPGTE 375
           T+ F+    G +  +   +  L L  +  +AG+AS+L G ++  T ++   +V       
Sbjct: 308 TMLFIGF--GFLGLLLPAAGVLSLEDHGAVAGSASALLGAIQMITAAVSMTLVGVFADHT 365

Query: 376 TWPMIFVMAACSVLSG-AFYWTLGR 399
             PM+  +A C + +     WTL R
Sbjct: 366 PAPMLIGIALCGIAAMLTTLWTLRR 390



 Score = 33.9 bits (76), Expect = 9e-06
 Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 8/99 (8%)

Query: 1   MSASTVNTQQTPQMSLLLYIVLGALGALTPLAIDMYLPAMPTIARDFGVNAGAVQITLTA 60
           ++ +T+       M  +L+I  G LG L P A  + L     +A       GA+Q+ +TA
Sbjct: 293 LATTTLWVDSLALMMTMLFIGFGFLGLLLPAAGVLSLEDHGAVAGSASALLGAIQM-ITA 351

Query: 61  YTAGFAIGQLLHGPLADSFGRRPVMLCGIFLFGIAAMVS 99
                A+   L G  AD       ML GI L GIAAM++
Sbjct: 352 -----AVSMTLVGVFADH--TPAPMLIGIALCGIAAMLT 383