Pairwise Alignments

Query, 401 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., 2-module integral membrane pump; multidrug resistance (VIMSS) from Escherichia coli BW25113

 Score =  147 bits (371), Expect = 5e-40
 Identities = 111/385 (28%), Positives = 190/385 (49%), Gaps = 25/385 (6%)

Query: 14  MSLLLYIVLGALGALTPLAIDMYLPAMPTIARDFGVNAGAVQITLTAYTAGFAIGQLLHG 73
           ++LLL +VL  L A+  +A  +Y+PA+  +ARD  V  GAVQ  + AY   + + QL +G
Sbjct: 7   VNLLLMLVL--LVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYG 64

Query: 74  PLADSFGRRPVMLCGIFLFGIAAMVSATTNGIEALTYIRAAQGFAGAAAAVVIQAVVRDM 133
           P++D  GRRPV+L G+ +F +A +V+ TT+ +  L    A QG       V+ + + RD+
Sbjct: 65  PISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDL 124

Query: 134 FDREDFARAMSFVTLVVTLAPLVAPMIGGHLAIWFGWRSIF-WVLALFAALVIAMVMWKI 192
           ++R     A S + + + ++PL+AP+IGG L   + WR+ + ++L L A +  +M  W +
Sbjct: 125 YERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARW-M 183

Query: 193 PETL---SPENRQPLRFRSTMRNYFDLCKNPVAMGLIFSGAFSFAGMFAFLTAGAFVYID 249
           PET    +P  R    +++   N    C   + +G         AG+ AF      +   
Sbjct: 184 PETRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLIG-------GLAGIAAFEACSGVLMGA 236

Query: 250 IYGVSPDGFGYLFGLNIVAMIALTTINGRFVKKIGSHNMLRFALFLQLMAGIGLFVSWVL 309
           + G+S      LF L I A        GR  K+  +  ++  ++   L+AG+   + W+ 
Sbjct: 237 VLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST--LMWQSVICCLLAGL---LMWIP 291

Query: 310 DW----GLWG-TVPFVVLFVGTISTIGSNSMGLLLSKYPRMAGTASSLAGTLRFGTGSII 364
           DW     +W   VP  + F G        + G  +  +P +AGTA +L G L+     ++
Sbjct: 292 DWFGVMNVWTLLVPAALFFFGAGMLFPLATSG-AMEPFPFLAGTAGALVGGLQNIGSGVL 350

Query: 365 GAVVAALPGTETWPMIFVMAACSVL 389
            ++ A LP T    +  +M    +L
Sbjct: 351 ASLSAMLPQTGQGSLGLLMTLMGLL 375