Pairwise Alignments

Query, 401 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 396 a.a., bicyclomycin/multidrug efflux system (NCBI) from Escherichia coli BW25113

 Score =  374 bits (961), Expect = e-108
 Identities = 183/379 (48%), Positives = 257/379 (67%)

Query: 15  SLLLYIVLGALGALTPLAIDMYLPAMPTIARDFGVNAGAVQITLTAYTAGFAIGQLLHGP 74
           S  +  +LG L  L PL+IDMYLPA+P I+  FGV AG+ Q+TL+ Y  GFA+GQL++GP
Sbjct: 8   SFAIVFILGLLAMLMPLSIDMYLPALPVISAQFGVPAGSTQMTLSTYILGFALGQLIYGP 67

Query: 75  LADSFGRRPVMLCGIFLFGIAAMVSATTNGIEALTYIRAAQGFAGAAAAVVIQAVVRDMF 134
           +ADSFGR+PV+L G  +F  AA+  A  N I+ L  +R   G A AAA+VVI A++RD++
Sbjct: 68  MADSFGRKPVVLGGTLVFAAAAVACALANTIDQLIVMRFFHGLAAAAASVVINALMRDIY 127

Query: 135 DREDFARAMSFVTLVVTLAPLVAPMIGGHLAIWFGWRSIFWVLALFAALVIAMVMWKIPE 194
            +E+F+R MSFV LV T+APL+AP++GG + +W  W  IFW+LAL A L  AM+ + I E
Sbjct: 128 PKEEFSRMMSFVMLVTTIAPLMAPIVGGWVLVWLSWHYIFWILALAAILASAMIFFLIKE 187

Query: 195 TLSPENRQPLRFRSTMRNYFDLCKNPVAMGLIFSGAFSFAGMFAFLTAGAFVYIDIYGVS 254
           TL PE RQP   R+T+ N+  L ++   +  + +  FSFAGMF+FL+AG FVYI+I  V+
Sbjct: 188 TLPPERRQPFHIRTTIGNFAALFRHKRVLSYMLASGFSFAGMFSFLSAGPFVYIEINHVA 247

Query: 255 PDGFGYLFGLNIVAMIALTTINGRFVKKIGSHNMLRFALFLQLMAGIGLFVSWVLDWGLW 314
           P+ FGY F LNIV +  +T  N RFV++IG+ NM R  L++Q +    + +S +L  G W
Sbjct: 248 PENFGYYFALNIVFLFVMTIFNSRFVRRIGALNMFRSGLWIQFIMAAWMVISALLGLGFW 307

Query: 315 GTVPFVVLFVGTISTIGSNSMGLLLSKYPRMAGTASSLAGTLRFGTGSIIGAVVAALPGT 374
             V  V  FVG +S + SN+M ++L ++P MAGTASSLAGT RFG G+I+GA+++     
Sbjct: 308 SLVVGVAAFVGCVSMVSSNAMAVILDEFPHMAGTASSLAGTFRFGIGAIVGALLSLATFN 367

Query: 375 ETWPMIFVMAACSVLSGAF 393
             WPMI+ +A C+  S  F
Sbjct: 368 SAWPMIWSIAFCATSSILF 386