Pairwise Alignments

Query, 458 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 467 a.a., multidrug transporter from Pseudomonas simiae WCS417

 Score = 87.0 bits (214), Expect = 1e-21
 Identities = 100/420 (23%), Positives = 174/420 (41%), Gaps = 18/420 (4%)

Query: 19  LIAIALPITLQNIMFSSRGLVDVLMLGQLGEAEIAAVGVAARATFVTTIMLVGVTTGGAL 78
           ++ ++ P+    +      L D LM+ +L    +A  G+ A +    +I  +GV      
Sbjct: 14  ILRLSGPLIASQLAHMLMVLTDTLMMARLSPEALAGGGLGAASYSFVSIFCIGVIAAVGT 73

Query: 79  LTAQYWGAGDRKGVREST-ALTWLVSNFFAFFTVLLFLFFPQQIMSLTTDSEQVNALGSQ 137
           L A   GAGD +G    T A  WL         +LL+   P  ++   T++   +A   Q
Sbjct: 74  LVAIRHGAGDIEGATRLTQAGLWLAWLMALAAGLLLWNLKPLLLLFGQTETNVHSA--GQ 131

Query: 138 YLIITSFTMFAVACVSSMAVGLRAMHKPGVSTFFSGIGIVSNVVLNWILIFGKFGFPAMG 197
           +L I  F +       ++     A+ K       S  G V+N +LN  LI G FG P +G
Sbjct: 132 FLTILPFALPGFLSFMALRGFTSAIGKAQPVMVISLGGAVANYLLNHALIEGMFGLPKLG 191

Query: 198 IQGAAIAT-VLSGAIEIACLYSYLYGKKHLMAFGWQDIKAVIDWPKISRFLRLSLPTTFN 256
           + G  + T V++  + +A ++ Y++  +   A+        ++   +    RL LP    
Sbjct: 192 LMGIGLVTAVVANGMALALMW-YIHRNRTYAAYPLSTGLLRLNTQYLRELWRLGLPIGGT 250

Query: 257 FLIWAAGLFTYHAI-MGQTGVQGLAALSVMTPVESISLSLLIGMSTAAAVLVGNQLGA-K 314
           + +   GLF + A+ MG  G   LAA  +   + S++  +  GMS A  + +G   GA +
Sbjct: 251 YAV-EVGLFAFAALCMGTMGSTQLAAHQIALQIVSVAFMVPAGMSYAVTMRIGQHYGAGQ 309

Query: 315 NYEAVYYQAIGV-TACSVLVGIVVAIGLYLVQIPVLGAFTALTPETRELSEKFMLILCLG 373
             +A     +G+    +V++G    + LY    P++G    +        +  +L + L 
Sbjct: 310 LLQARLAGRVGIGFGAAVMLGFAAVLWLY--SDPLIGLL--IDHNDPAFHDVIVLAVSLL 365

Query: 374 IVLRSFPM-----TAIVGVLRAGGDVKFCLGQDIVAQWCIGIPLAAFAALVLKVEPEWIY 428
            V   F +     T  +G +R   D K          W IG P A   A  L   P  ++
Sbjct: 366 AVAAWFELFDGVQTIAMGCIRGLKDAKTTFLIGAGCYWLIGAPSAWLMAFTLGWGPTGVW 425