Pairwise Alignments

Query, 458 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 451 a.a., multidrug transporter MATE from Pseudomonas simiae WCS417

 Score = 92.4 bits (228), Expect = 3e-23
 Identities = 95/409 (23%), Positives = 182/409 (44%), Gaps = 12/409 (2%)

Query: 25  PITLQNIMFSSRGLVDVLMLGQ-LGEAEIAAVGVAARATFVTTIMLVGVTTGGALLTAQY 83
           P+ L N + S  G ++ + +GQ LG   +AAV       F    +++G+  G ++L  Q 
Sbjct: 19  PMVLSNFLQSFSGTLNGIYVGQMLGTQALAAVSGMFPIVFFFIALVIGLGAGASVLIGQA 78

Query: 84  WGAGDRKGVRESTALTWLVSNFFAFFTVLL-FLFFPQQIMSLTTDSEQVN-ALG-SQYLI 140
           WGA +   V+  T  T  +         +L  LF    + +L T  + ++ A+G +Q ++
Sbjct: 79  WGAQETAMVKAITGATLTLGALVGVVAAVLGSLFARPALQALGTPVDVLDDAVGYAQKMM 138

Query: 141 ITSFTMFAVACVSSMAVGLRAMHKPGVSTFFSGIGIVSNVVLNWILIFGKFGFPAMGIQG 200
           +    +      + +  G+     P ++   S +     ++L   LI G  G P MGIQ 
Sbjct: 139 LIMPLLLVFILYTQLLRGVSDTISPLLALMVSTL---VGLLLTPALIRGWVGLPPMGIQS 195

Query: 201 AAIATVLSGAIEIACLYSYLYGKKHLMAFGWQDIKAV-IDWPKISRFLRLSLPTTFNFLI 259
           A  A ++  A+ +  L   L  K H+MA   + + A+ +D   + + LR+ LPT    ++
Sbjct: 196 AVYAGLVGNALAMLFLILRLRHKNHVMAPDRELLAALRLDRVILGKVLRIGLPTGLQMVV 255

Query: 260 WAAGLFTYHAIMGQTGVQGLAALSVMTPVESISLSLLIGMSTAAAVLVGNQLGAKNYEAV 319
            +       A++   G Q  AA   +T + +      + ++  A++L    +GA   E +
Sbjct: 256 LSLSELVILALVNGHGSQATAAYGAVTQIVNYVQFPALSIAITASILGAQAIGAGRLERI 315

Query: 320 -YYQAIGVTACSVLVGIVVAIGLYLVQIPVLGAFTALTPETRELSEKFMLILCLGIVLRS 378
                 G+   + L G ++ +G Y++   +LG F  +T +   ++ + +L + L  +L  
Sbjct: 316 GPILRTGLLINTCLTGGLIVLG-YVLSHWLLGLF--ITDDAARVNAEHLLHIMLWSILVF 372

Query: 379 FPMTAIVGVLRAGGDVKFCLGQDIVAQWCIGIPLAAFAALVLKVEPEWI 427
                I G++RA G V   +   I    C+ +P+A        +E  W+
Sbjct: 373 GFQAVIGGIMRASGVVLMPVVISIFCVLCVELPMAYLLNAHFGLEGVWM 421