Pairwise Alignments

Query, 458 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 484 a.a., MATE efflux family protein from Variovorax sp. SCN45

 Score = 64.7 bits (156), Expect = 6e-15
 Identities = 91/348 (26%), Positives = 153/348 (43%), Gaps = 19/348 (5%)

Query: 13  GDFFRRLIAIALPITLQNIMFSSRGLVDVLMLGQLGEAEIAA-VGVAARATFVTTIMLVG 71
           G   R +  +A    +  I   +  L+++  +  LGE E AA VG A    F    + +G
Sbjct: 18  GSLMRHVCVMAGTGAIGLIAVFAVDLINLFYISLLGEKETAAAVGFAGVVGFFHASLCIG 77

Query: 72  VTTGGALLTAQYWGAGDRKGVRE--STALTWLVSNFFAFFTVLLFLFFPQQIMSLTTDSE 129
           +T G A + ++  GAG     R   +++L  +V+      T   F   P  + +L    E
Sbjct: 78  LTIGIAAVVSRTVGAGRMDDARRIGTSSLVLMVALSVLAGTGTAFFLHP-ALQALGAQGE 136

Query: 130 QVNALGSQYLIITSFTMFAVACVSSMAVGLRAMHKPGVSTFFSGIGIVSNVVLNWILIFG 189
               L  +YL +T  T+  +    + +  LR++     S   +  G     VL+ ILIFG
Sbjct: 137 TAR-LAHRYLSVTVHTLPLLGIGMATSALLRSVGDARRSMTVTLAGAFVTAVLDPILIFG 195

Query: 190 KFGFPAMGIQGAAIATVLSGAIEIACLYSYLYGKKHLMAFGWQDIKAVIDWPKISRFLRL 249
            FG   +G+ GAAI+ V+S    +A L  +    KH M   +Q  +   D   +      
Sbjct: 196 -FG---LGLDGAAISAVVS-RTALAALGLHGVLVKHRMLGPFQASRLGADARALGSVAGP 250

Query: 250 SLPTTFNFLIWAAGLFTYHAI--MGQTGVQGLAALSVMTPVESISLSLLIGMSTAAAVLV 307
           ++ T     + AA  F  HA+   G + V G A +  +TPV   +  L+  +S A   ++
Sbjct: 251 AVLTNLATPVGAA--FVTHAVAQFGPSAVAGAATIDRLTPV---AFGLVYALSGAVGPIL 305

Query: 308 GNQLGAKNYEAVYYQAIGVTACSVLVGIVVA-IGLYLVQIPVLGAFTA 354
              LGA  Y  V  + +  +   ++  + VA + L L Q  ++ AF+A
Sbjct: 306 AQNLGAGQYRRV-QEGLRASLLFMVASVAVAWLLLALGQGLLVRAFSA 352



 Score = 26.6 bits (57), Expect = 0.002
 Identities = 43/194 (22%), Positives = 71/194 (36%), Gaps = 36/194 (18%)

Query: 261 AAGLFTYHAIMGQTGVQGLAALSVMTPVESISLSLLIGMSTAAAVLVGNQLGAKNYEAVY 320
           +  L  +  +M  TG  GL A+  +  +    +SLL    TAAAV     +G  +     
Sbjct: 17  SGSLMRHVCVMAGTGAIGLIAVFAVDLINLFYISLLGEKETAAAVGFAGVVGFFHASLCI 76

Query: 321 YQAIGVTA-----------------------CSVLVGIVVAIGLYLVQIPVLGAFTALTP 357
              IG+ A                         V + ++   G      P L A  A   
Sbjct: 77  GLTIGIAAVVSRTVGAGRMDDARRIGTSSLVLMVALSVLAGTGTAFFLHPALQALGA-QG 135

Query: 358 ETRELSEKFMLIL-----CLGIVLRSFPMTAIVG-------VLRAGGDVKFCLGQDIVAQ 405
           ET  L+ +++ +       LGI + +  +   VG       V  AG  V   L   ++  
Sbjct: 136 ETARLAHRYLSVTVHTLPLLGIGMATSALLRSVGDARRSMTVTLAGAFVTAVLDPILIFG 195

Query: 406 WCIGIPLAAFAALV 419
           + +G+  AA +A+V
Sbjct: 196 FGLGLDGAAISAVV 209