Pairwise Alignments

Query, 458 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 457 a.a., Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 84.0 bits (206), Expect = 1e-20
 Identities = 99/422 (23%), Positives = 176/422 (41%), Gaps = 42/422 (9%)

Query: 17  RRLIAIALPITLQNIMFSSRGLVDVLMLGQLGEAEIAAVGVAARATFVTTIMLVGVTTGG 76
           R+L+A+A+P+ L  +  ++ G VD +M G     ++AAV +       T+I L  +  G 
Sbjct: 9   RQLLALAIPVILAQVAQTAMGFVDTVMAGGYSATDMAAVAIG------TSIWLPAILFGH 62

Query: 77  ALLTA------QYWGAGDRKGVRESTALTWLVSNFFAFFTVLLFLFFPQQIMSL-----T 125
            LL A      Q  G+G R+ +       + ++ F +   +++       I S+      
Sbjct: 63  GLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLVMIVLWNAGYIIRSMHNIDPA 122

Query: 126 TDSEQVNALGSQYLIITSFTMFAVACVSSMAVGLRAMHKPGVSTFFSGIGIVSNVVLNWI 185
              + V  L +       +  F VA   +   GL A  KPG+   F  +G++ N+ +N+I
Sbjct: 123 LADKAVGYLRALLWGAPGYLFFQVA--RNQCEGL-AKTKPGMVMGF--LGLLVNIPVNYI 177

Query: 186 LIFGKFGFPAMGIQGAAIATVLSGAIEIACLYSYLYGKKHLMAFGWQDIKAVIDWPK--- 242
            I+G FG P +G  G  +AT     +    + SY+   KH  A   +DI+    + K   
Sbjct: 178 FIYGHFGMPELGGIGCGVATAAVYWVMFIAMLSYI---KH--ARSMRDIRNEKGFGKPDS 232

Query: 243 --ISRFLRLSLPTTFNFLIWAAGLFTYHAIM-GQTGVQGLAALSVMTPVESISLSLLIGM 299
             + R ++L LP     L +   LF   A++    G+  +A   +     S+   L + +
Sbjct: 233 VVMKRLIQLGLPIAL-ALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSL 291

Query: 300 STAAAVLVGNQLG---AKNYEAVYYQAIGVTACSVLVGIVVAIGLYLVQIPVLGAFTALT 356
           + A  + VG +LG     + +      +GV  C  +V  +  + L       +       
Sbjct: 292 AAAVTIRVGYRLGQGSTLDAQTAARTGLGVGICMAVVTAIFTVTLR----KHIALLYNDN 347

Query: 357 PETRELSEKFMLILCLGIVLRSFPMTAIVGVLRAGGDVKFCLGQDIVAQWCIGIPLAAFA 416
           PE   L+ + ML+  +  +  S  +    G+LR   D +        A W +G+P     
Sbjct: 348 PEVVALAAQLMLLAAVYQISDSIQVIG-SGILRGYKDTRSIFFITFTAYWVLGLPSGYIL 406

Query: 417 AL 418
           AL
Sbjct: 407 AL 408