Pairwise Alignments

Query, 458 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 495 a.a., predicted multidrug efflux system (RefSeq) from Escherichia coli BW25113

 Score = 91.7 bits (226), Expect = 5e-23
 Identities = 90/450 (20%), Positives = 185/450 (41%), Gaps = 23/450 (5%)

Query: 15  FFRRLIAIALPITLQNIMFSSRGLVDVLMLGQLGEAEIAAVGVAARATFVTTIMLVGVTT 74
           F+R +  +A+PI ++N      G++   ++  LG+  +A VG+A     V       +  
Sbjct: 38  FWREITPLAVPIFMENACVLLMGVLSTFLVSWLGKDAMAGVGLADSFNMVIMAFFAAIDL 97

Query: 75  GGALLTAQYWGAGDRKGVRESTALTWLVSNFFAFFTVLLFLFFPQQIMSLTTD--SEQVN 132
           G  ++ A   G  DR+  R +T  + ++   FA     L   F +QI+       + +V 
Sbjct: 98  GTTVVVAFSLGKRDRRRARVATRQSLVIMTLFAVLLATLIHHFGEQIIDFVAGDATTEVK 157

Query: 133 ALGSQYLIITSFTMFAVACVSSMAVGLRAMHKPGVSTFFSGIGIVSNVVLNWILIFGKFG 192
           AL   YL +T  +  A A     +  LR      +    +G   + N++++ ILI+G F 
Sbjct: 158 ALALTYLELTVLSYPAAAITLIGSGALRGAGNTKIPLLINGSLNILNIIISGILIYGLFS 217

Query: 193 FPAMGIQGAAIATVLSGAI-EIACLYSYLYGKKHLMAFGWQDIKAVIDWPKISRFLRLSL 251
           +P +G  GA +   +S  I  +A L+    G    +    +     +++  I   + + +
Sbjct: 218 WPGLGFVGAGLGLTISRYIGAVAILWVLAIGFNPALRISLKSYFKPLNFSIIWEVMGIGI 277

Query: 252 PTTFNFLIWAAGLFTYHAIMGQTGVQGLAALSVMTPVESISLSLLI-----GMSTAAAVL 306
           P +   +     LFT   ++ Q  V G+    +     + S++ LI      + +A+ ++
Sbjct: 278 PASVESV-----LFTSGRLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGSALGSASTII 332

Query: 307 VGNQLGAKNYEAVYYQAIGVTACSVLVGIVVAIGLYLVQIPVLGAFTALTPETRELSEKF 366
            G +LG         Q   V   S L G+     L      V+ +F    P+      K 
Sbjct: 333 TGRRLGVGQIAQAEIQLRHVFWLSTL-GLTAIAWLTAPFAGVMASFYTQDPQV-----KH 386

Query: 367 MLILCLGIVLRSFPMTAIVGVLRAG----GDVKFCLGQDIVAQWCIGIPLAAFAALVLKV 422
           ++++ + +     P+ +   VL AG     D ++ +   +++ W   + +     ++L  
Sbjct: 387 VVVILIWLNALFMPIWSASWVLPAGFKGARDARYAMWVSMLSMWGCRVVVGYVLGIMLGW 446

Query: 423 EPEWIYLLFLTEEVVKWFGSLHRMKSKKWM 452
               +++    +  V+      RM + +W+
Sbjct: 447 GVVGVWMGMFADWAVRAVLFYWRMVTGRWL 476