Pairwise Alignments

Query, 458 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., multidrug efflux protein from Agrobacterium fabrum C58

 Score =  132 bits (333), Expect = 2e-35
 Identities = 112/426 (26%), Positives = 192/426 (45%), Gaps = 23/426 (5%)

Query: 2   SVVSQVLSHMRGDFFRRLIA-IALPITLQNIMFSSRGL--VDVLMLGQLGEAEIAAVGVA 58
           SVV++ +    G +F    A + L I L     +  G+   D++++GQLG  ++AA+ +A
Sbjct: 4   SVVAETVPSGSGSWFSHFKATLVLGIPLIGAQLAQLGIHTTDMVIVGQLGAEKLAAMVLA 63

Query: 59  ARATFVTTIMLVGVTTGGALLTAQYWGAGDRKGVRESTALTWLVSNFFAFFTVLLFLFF- 117
            +  FV  I   G +     + AQ +G GD    R S  +   V+   A++ + L +FF 
Sbjct: 64  GQFFFVVFIFGSGFSVAVVPMVAQAYGQGDATSARRSLRMGMWVA--IAYWLLALPIFFN 121

Query: 118 PQQIMSLTTDSEQVNALGSQYLIITSFTMFAVACVSSMAVGLRAMHKPGVSTFFSGIGIV 177
            ++I+     +  V AL   YL I  F +        +   + A+ + G+  + + I +V
Sbjct: 122 AERILVYLGQNPNVAALTGHYLAIAKFGLLPALLFYVLRGLVSAIGRAGIILYVTIIMLV 181

Query: 178 SNVVLNWILIFGKFGFPAMGIQGAAIATVLSGAIEIACLYSYLY-----GKKHLMAFGWQ 232
            N ++ ++L+FG FG PAMG+ GAA+  V+  A     + +Y+       K  L    W+
Sbjct: 182 MNGLMAYVLVFGHFGLPAMGMNGAAVVAVIVNAFSFIFIVAYVQTREETKKYELFVRFWR 241

Query: 233 DIKAVIDWPKISRFLRLSLPTTFNFLIWAAGLFTYHAIMGQTGVQGLAALSVMTPVESIS 292
                 DW  +   LRL LP +   L           +MGQ G   LAA  +   + SI+
Sbjct: 242 P-----DWHALFEVLRLGLPISITILAEVTLFAAASILMGQIGTVQLAAHGIALQLASIA 296

Query: 293 LSLLIGMSTAAAVLVGNQLGAKNYEAVYYQAIGVTACSVLVGIVVAIGLYLVQIPVLGAF 352
             + +G+S AA V VG   G  +++ +   +I + A  +  GI +  G+    +P   A 
Sbjct: 297 FMIPLGLSQAATVRVGVARGQGDFKNLIRASIMIYA--IACGIALCGGILFAAVPEFLAK 354

Query: 353 TALTPETRELSEKFMLILCLGIVLRSFPM-----TAIVGVLRAGGDVKFCLGQDIVAQWC 407
             L P+  E +E       L ++   F +         G+LR   D +      +++ W 
Sbjct: 355 WFLDPKLPEAAEVLAYASSLVVIAGIFQLVDGIQAVTAGLLRGLKDARIPAMLALISYWP 414

Query: 408 IGIPLA 413
           IG+ LA
Sbjct: 415 IGLALA 420