Pairwise Alignments

Query, 836 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 819 a.a., putative ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  314 bits (804), Expect = 1e-89
 Identities = 255/837 (30%), Positives = 407/837 (48%), Gaps = 63/837 (7%)

Query: 27  ALLGHYRRYPLQICLVWLGLTLGVSLLVGVTAINHHARQSYEHGEKLFSNPLPYRIRSKH 86
           ALL H+RR+ +Q   ++ GL L  +L  GV A+N  AR  Y     + + PL  ++ +++
Sbjct: 10  ALLSHWRRHRVQCFSIFTGLWLATALWTGVQALNSQARSDYARASAVLTGPLQAQLIARN 69

Query: 87  IANKIPQGLYIQLRRDGFQQCVPFDD-YRFSTTSGLDLILQGIDPVALLSIDNGKPLAQQ 145
              +  Q LY+QLRR G+      +   R        + L GI+P++L       P +  
Sbjct: 70  -GERFDQALYVQLRRLGWAVSPVLEGRLRLPGEPARSVRLIGIEPLSL------PPASSI 122

Query: 146 SGLQL--------MNPPYPVMVSQELAKLQDWQEGDYIALTDGSQLGPIVIDRHNQVTGM 197
           +G+Q+        +  P    V  +  +  +   G     ++G  L P+V+     +   
Sbjct: 123 AGVQVQAFDLQAFVGSPGQAWVGPDTLRQLNTSPGSPTRDSEGQLLPPMVLQP--ALAPG 180

Query: 198 RVVADLSLVRMLKKGSG-LTVIACADMP---PAKLDKLKKSLPNGLTLTRSTRSELESLT 253
            +V D+   + L    G L+ +  AD P   PA + +  +  P      R     L+ LT
Sbjct: 181 VIVVDIGHAQTLLNAPGQLSRLLLADTPGPLPADIARYLELQP------RQDDGGLQRLT 234

Query: 254 QAFHLNLTAMGMLAFLVGIFIFYQAMSLSMVQRQPLVGTLRQIGVNGWQLAKALLIELLV 313
            +FHL+LTA+G+LAF+VG+FI + A+ L++ QR+ L+  LR  GV+   L  AL++EL +
Sbjct: 235 DSFHLDLTALGLLAFVVGLFIAHAAIGLALEQRRGLIRNLRACGVSLKTLLCALVLELGL 294

Query: 314 LVLVSWVCGNVLGLLLANQLIPSVASSLGYLYNANV----DLAIGWDWSWSSYSLLMALL 369
              +  + G   G  LA  L+P VA+SL  LY A V     L  GW       S+L ALL
Sbjct: 295 FAALGGLAGVASGYALAAWLLPDVAASLRGLYGAQVAGTLSLPAGWWLLGVLVSVLGALL 354

Query: 370 AAFAS----CTWPLVRLLRSQPIRLSARLSLVRFAGKEFKLQALLACALCVAAVAIYQAP 425
           A   S       PL+ L + Q  RL+         G   + QALLA  L + A+      
Sbjct: 355 AGLESVMRAARLPLLALAQPQAWRLAQ--------GPWLQRQALLAGLLLLLALGCGVFG 406

Query: 426 KSQQSGFAIIGLMLLSVALFTPYIIWTLFTSFSYTLRWVKVRWFFADAAASMSYRGVATM 485
               S FA++  +LL+ AL  P ++  +    +        +WF AD+   +    +A +
Sbjct: 407 AGLLSAFAMLAGLLLAAALLLPALLDQVLAWLARRCHRPLAQWFVADSRQQLPALSLALV 466

Query: 486 AFMVALAANIGVETMVGSFRDTTDRWLSQRLAADIYLYPSNSVAS-RMSQWLGQQPEVDA 544
           A ++ALAA++GV +M   FR T   WL  RL+AD+Y+ P ++    ++ +WL QQP    
Sbjct: 467 ALLLALAASVGVGSMTEGFRKTFVGWLDLRLSADLYVTPRDTAQGLQIVEWLKQQPGASV 526

Query: 545 VWWRWEKDFASQQGPVQIVSTGASDGELDSLTVKLGVP------NYWYHLHHARGVMISE 598
           V   W  D   Q  PVQ+       G +D    +   P        W  L   + VM+SE
Sbjct: 527 VMPGWRADMQLQGWPVQV------QGIVDHPAYRTRWPLLEQHSRAWQQLASGQAVMLSE 580

Query: 599 SMALKLGIRPGDLIDLPEPMGSGWAVFGVYYDYGNPYHQVMMSHQNWMKAFAGTGNVA-L 657
            +A +L ++ GD + LP    +   V G+Y DYGNP   V+++   W++A      +A L
Sbjct: 581 QLARRLNLQLGDSLKLPAGTPA-MPVVGIYADYGNPKGHVLVN-AGWLRAHWPQATLAGL 638

Query: 658 AVVLK-EGLTGESVKKRLDTIFRLDADRIFDNTNIHSHAMRVFDRTFSIAGTLGNITLFI 716
           +V L  EG+   S+K  L   F LD  R+ +   +   +  VF+RTF+    L ++TL +
Sbjct: 639 SVDLNAEGVA--SLKAALQQHFALDDSRVVEQARLKRWSTDVFNRTFAATAALNSLTLGV 696

Query: 717 AVCGIFFSTLAGETSRLRHISLLRCLGVSGKELVLIGGMQLFVFGAISLLIALPLGLTLA 776
           A   +F + L    +RL  ++ L  LGV   +LV +   Q  +    ++L+A+PLGL LA
Sbjct: 697 AGVALFINLLTLGQARLGQLAPLWALGVRRMQLVWLSLGQTLMLSGFTVLLAIPLGLLLA 756

Query: 777 KLVIDVVIKHSFGWTMQLQMVPGEYVYTVVWSMMALILAGALPIIRLARKSPMKSLR 833
             ++ VV   +FGW + L + P + +   V  M+  +LA A P+ +LAR+ P + LR
Sbjct: 757 WCLVAVVNVQAFGWRLPLYVFPVQLLQLTVLGMLTSLLACAWPLWQLARRPPRELLR 813