Pairwise Alignments

Query, 836 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 850 a.a., AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  136 bits (342), Expect = 6e-36
 Identities = 187/813 (23%), Positives = 332/813 (40%), Gaps = 61/813 (7%)

Query: 29  LGHYRRYPLQICLVWLGLTLGVSLLVGVTAINHHARQSYEHGEKLFSNPLPYRIRSKHIA 88
           L   R +P +     + + LGV+L   V  IN  A   +       +      +R++   
Sbjct: 10  LQELRHHPWRNASAVVAVMLGVALAFAVHLINASALAEFSSAVSSVNGQPDVELRARQ-- 67

Query: 89  NKIPQGLYIQLRR-----------DGFQQCVPFDDYRFSTTS-GLD-LILQGIDPVALLS 135
             +   L  ++             +G  Q V  D  R S    G+D L++ G+ P AL+ 
Sbjct: 68  GTLDDALLARVAAQPGVALASPVLEGPVQVVASDGGRLSVKLVGVDALVVAGLSP-ALMP 126

Query: 136 IDNGKPLAQQSGLQLMNPPYPVMVSQELAKLQDWQEGDYIALTDGSQLGPIVIDRHNQVT 195
           + +G    ++  L       P  V    A  Q       + L +G+ L   V  R N   
Sbjct: 127 VADGDGATRRFDLFA-----PDAVFLNAAAQQALAGQPRLPLQNGAVLR--VAGRVNAPG 179

Query: 196 GMRVVADLSLVR-MLKKGSGLTVIACADMPPAKLDKLKKSL--PNGLTLTRSTRS--ELE 250
              +V D++  + +L +   L+ I     P A+  ++  +L  P  +   R  +S   + 
Sbjct: 180 APLLVMDVAAAQDLLDRVGQLSRIDLRLAPGARAAEVLAALALPANVIAQRPEQSGERVS 239

Query: 251 SLTQAFHLNLTAMGMLAFLVGIFIFYQAMSLSMVQRQPLVGTLRQIGVNGWQLAKALLIE 310
           +L++A+ +NLT + ++A   G F+ +  +SLS+ +RQP    L  +G++  +  + +L E
Sbjct: 240 NLSRAYRVNLTVLALVALFTGAFLVFSVLSLSVARRQPQFALLGVLGLSSRERLRLVLAE 299

Query: 311 LLVLVLVSWVCGNVLGLLLANQLIPSVASSLGYLYNANVDLAIGWDWSWSSYSLLMALLA 370
             +L L+    G  LG  LA   +  +   LG  Y + V   + W    +   LL+ ++A
Sbjct: 300 SALLGLLGSALGIALGTALAALALRLLGGDLGGGYFSGVTPPLLWSPLAAGVYLLLGVVA 359

Query: 371 AFASCTWPLVRLLRSQPIRLSARLSLVRFAGKEFKLQALLACALCVAAVAIYQAPK---S 427
           A     WP     R  P      L      G     +  LA AL + A A+  AP     
Sbjct: 360 ALVGGWWPAQATARLAPALALKGLGAPLRPGAR---RHTLALALVLLAAAMAWAPPVAGI 416

Query: 428 QQSGFAIIGLMLL-SVALFTPYIIWTLFTSFSYTLRWVKVRWFFADAAASMSYRGVATMA 486
             + +  +GL+L+  +A     + W L        R          A        VAT  
Sbjct: 417 PLAAYVSVGLLLVGGIAALPLGVGWLLDRIAPRIARHALPVLAVERARRLRETAAVATSG 476

Query: 487 FMVALAANIGVETMVGSFRDTTDRWLSQRLAADIYLYPSNSVASRMSQ----WLGQQPEV 542
            + +LA ++ +  MV SFRD+   WL   L A +Y+    S A   S     ++     V
Sbjct: 477 VVASLALSVALTVMVASFRDSVTHWLDAVLPAQLYVRSVGSGAGDGSHLPAAFVAGVAGV 536

Query: 543 DAV-----WWRWEKDFASQQGPVQIVSTGASDGELDSLTVKLGVPNYWYHLHHARGVMI- 596
           + V             A ++  + +++         +L++ L V N         G  + 
Sbjct: 537 EGVARVDTLRATPVQLAPERPAIALLTRPLETTPGGTLSLPL-VGNALPAPAAPDGARVV 595

Query: 597 ----SESMALKLGIRPGDLIDL-------PEPMGSGWAVFGVYYDYGNPYHQVMMSHQNW 645
               SE+M    G  PG  +         P+  G+ + V GV+ DY   +  V+M   ++
Sbjct: 596 AVYVSEAMVDLYGAPPGSWLPALAQAFAEPQVRGTRFFVAGVWRDYARQHGSVVMDRADF 655

Query: 646 MKAFAGTGNVALAVVLKEGLTGESVKKRLDTIFR----LDADRIFDNTNIHSHAMRVFDR 701
           ++         LA+ L EG    +V++R+  I       DA        I ++++R+FDR
Sbjct: 656 VRLTGDARVNDLALHLAEGADENTVRERIRAIAEAQGAADAIEFASVGQIRANSLRIFDR 715

Query: 702 TFSIAGTLGNITLFIAVCGIFFSTLAGETSRLRHISLLRCLGVSGKELVLIGGMQLFVFG 761
           +F++   L  + + I + G+  S  A   +R R   LL  LG++  +++ +  ++   + 
Sbjct: 716 SFAVTVWLQAVAIGIGLFGVAASFSAQVLARRREFGLLAHLGLTRSQILGVVALEGLAWT 775

Query: 762 AISLLIALPLGLTLAKLVIDVVIKHSFGWTMQL 794
            +  L  L LGL ++ +++ VV   SF WTM L
Sbjct: 776 VLGALAGLALGLAVSLVLVHVVNPQSFHWTMDL 808