Pairwise Alignments

Query, 836 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 978 a.a., FtsX-like permease family protein from Alteromonas macleodii MIT1002

 Score =  110 bits (276), Expect = 3e-28
 Identities = 90/291 (30%), Positives = 140/291 (48%), Gaps = 21/291 (7%)

Query: 242 TRSTRSELESLTQAFHLNLTAMGMLAFLVGIFIFYQAMSLSMVQRQPLVGTLRQIGVNGW 301
           TR+T ++  SL  +F LNL AM  L  +V +FI   A++L    R P +  LRQ+G++  
Sbjct: 299 TRNTDNDTGSLPDSFRLNLWAMSGLMGVVALFIVLNALNLMYRTRLPNIIRLRQLGISQR 358

Query: 302 QLAKALLIELLVLVLVSWVCGNVLGLLLANQLIPSVASSLGYLYNA-------NVDLAIG 354
            L+ AL  ELLV  ++S   G  +G   A+ L P +  +   L+NA       N+    G
Sbjct: 359 ILSIALFTELLVYCVMSIPIGMFIGFQAASWLSPVINGTFTSLFNAVFVNPQVNLLFTFG 418

Query: 355 WDWSWSSYSLLMALLAAFASCTWPLVRLLRSQPIRLSARLSLVRFAGKEFKLQALLACAL 414
           +  + +  SL++  L +       L   L   P++    L        +F +  +  CAL
Sbjct: 419 FALTTTFISLVVFSLVSIVK----LSNALTVAPVKKENALG-------QFAVGLISLCAL 467

Query: 415 CVAAVAIYQAPKSQQSGFAIIGLMLLSVALFTPY--IIWTLFTSFSYTLRWVKVRWFFAD 472
            +  +A      +  + F +  L++ S AL   +  I+  L T F    +W    +  A+
Sbjct: 468 LLLFIAEGFVSSTASALFFVALLLITSCALILLWLPILSKLLTRF-VPRQWPVFHYVIAN 526

Query: 473 AAASMSYRGVATMAFMVALAANIGVETMVGSFRDTTDRWLSQRLAADIYLY 523
                S   +A  AF +AL ANIG+ TM  SFRD T++WL+QRL A  YLY
Sbjct: 527 MHLLSSKTRLAVCAFFIALTANIGMNTMTDSFRDATEQWLTQRLYAPFYLY 577



 Score = 62.4 bits (150), Expect = 1e-13
 Identities = 55/231 (23%), Positives = 97/231 (41%), Gaps = 26/231 (11%)

Query: 622 WAVFGVYYDYGNPYHQVMMSHQNWMK--------AFAGTGNVALAVVLKEGLTGESVKKR 673
           W V G+Y DYGN   Q+++   ++ +         F+G     +A+  +  +    +   
Sbjct: 747 WKVLGIYPDYGNLNGQILVPLPSFNRNDLLIRDQLFSGV----VAIYPEPSIEANVIGGN 802

Query: 674 LDTIFRLDADRIFDNTNIHSH--------------AMRVFDRTFSIAGTLGNITLFIAVC 719
             +I+  D       + +  H              +M+ FDRTF +   L   TL +A  
Sbjct: 803 KQSIYEKDILEQQLKSQLGEHREIALYTRQALLDTSMQTFDRTFVLTDGLNITTLLVAGV 862

Query: 720 GIFFSTLAGETSRLRHISLLRCLGVSGKELVLIGGMQLFVFGAISLLIALPLGLTLAKLV 779
               S           +S+LR LGVS  ++      Q  +   IS L+A+P G+ LA + 
Sbjct: 863 AFAVSLTVLTIGSAAQLSVLRALGVSQLKVKASLFAQYLLLCFISALLAIPFGVYLAYVF 922

Query: 780 IDVVIKHSFGWTMQLQMVPGEYVYTVVWSMMALILAGALPIIRLARKSPMK 830
           I  V +H+F W   L +     + +V  S++ + L   LP+ +L  K  ++
Sbjct: 923 IQQVNRHAFNWVYPLSINADVILSSVGLSLLIVSLVLLLPLGKLKPKIDLR 973