Pairwise Alignments

Query, 836 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 802 a.a., ABC transporter membrane spanning protein from Agrobacterium fabrum C58

 Score =  308 bits (790), Expect = 6e-88
 Identities = 237/813 (29%), Positives = 385/813 (47%), Gaps = 28/813 (3%)

Query: 26  KALLGHYRRYPLQICLVWLGLTLGVSLLVGVTAINHHARQSYEHGEKLFSNPLPYRIRSK 85
           +ALL H+R  PLQ+  +++G+ L  +L   V AIN  AR SY+    + +     ++ +K
Sbjct: 7   QALLSHWRHRPLQLFTLFVGVALATALWSAVQAINAEARASYDRAASVLAQNQLDQLVAK 66

Query: 86  HIANKIPQGLYIQLRRDGFQQCVPFD-DYRFSTTSGLDLILQGIDPVALLSIDNGKPLAQ 144
              + I    Y +LRR G       + ++RF TT    + L GIDP+ + S     P+ +
Sbjct: 67  D-GSTISSNTYARLRRAGLDVSPIIEGEHRFGTTR---IRLIGIDPLTMPSEGRVLPVGE 122

Query: 145 QSGL-QLMNPPYPVMVSQELAKLQDWQEGDYIALTDGSQLGPIVIDRHNQVTGMRVVADL 203
            SGL   M  P  ++VS   A            L D S L PI +   N   G   V   
Sbjct: 123 PSGLIDFMTAPGVMIVSPATAG----------TLKDTSGL-PIKMAA-NIPDGAGFVDIS 170

Query: 204 SLVRMLKKGSGLTVIACADMPPAKLDKLKKSLPNGLTLTRSTRSELESLTQAFHLNLTAM 263
           +  R+L +   L+ I  +      +  +    P         RS++  LT +FHLNLTA 
Sbjct: 171 TADRVLHRNGNLSRIVVSPTQKLDIQAVATVAPELSLKEAGGRSDVARLTDSFHLNLTAF 230

Query: 264 GMLAFLVGIFIFYQAMSLSMVQRQPLVGTLRQIGVNGWQLAKALLIELLVLVLVSWVCGN 323
           G LAF+VG+FI Y A  LS  QR+    TLR +G+    L   L+IE+ +  LV+   G 
Sbjct: 231 GFLAFVVGLFIAYSATGLSFEQRRGTFRTLRSLGIPLSSLTTMLVIEITLFALVAGALGV 290

Query: 324 VLGLLLANQLIPSVASSLGYLYNANVDLAIGWDWSWSSYSLLMALLAAFASCTWPLVRLL 383
           VLG ++A+ L+P VA++L  LY A V  ++     W    L MAL+  + S    L R+ 
Sbjct: 291 VLGYVVASTLLPGVAATLSGLYGARVAGSLSIRPEWWLTGLGMALVGTWLSSLQHLYRVW 350

Query: 384 RSQPIRLSARLSLVRFAGKEFKLQALLACALCVAAVAIYQAPKSQQSGFAIIGLMLLSVA 443
           R   +  +        + K   LQA+    L   +  +        +GFAI+   LL  A
Sbjct: 351 RMPILSTAHSRGWTMASVKSLVLQAIAGIFLIALSSLLIWIGSGLLAGFAILAAFLLGAA 410

Query: 444 LFTPYIIWTLFTSFSYTLRWVKVRWFFADAAASMSYRGVATMAFMVALAANIGVETMVGS 503
              P ++     +   + R V  RWFFAD    +    +A MA ++AL+ANIGV TMV S
Sbjct: 411 FILPPLLALALRAGERSSRHVLARWFFADTRQQLPGLSLALMALLLALSANIGVGTMVSS 470

Query: 504 FRDTTDRWLSQRLAADIYLYPSNSV-ASRMSQWLGQQPEVDAVWWRWEKDFASQQGPVQI 562
           FR T  RWL QRLAA++Y+   +   A+R+ +W           W    + +  Q  VQI
Sbjct: 471 FRQTFLRWLDQRLAAEVYVTARDEAEAARLRKWFPDHARAVLPIWSTRGEVSGAQ--VQI 528

Query: 563 VSTGASDGELDSLTVKLGVPNYWYHLHHARGVMISESMALKLGIRPGDLIDLPEPMGSGW 622
                     D   + LG    W  +   RG +++E          G  I LP     GW
Sbjct: 529 FGVADDPTYRDHWPLILGSATTWDEIASGRGALVNEQFWRSGNASLGQKIILP----GGW 584

Query: 623 A--VFGVYYDYGNPYHQVMMSHQNWMKAFAGTGNVALAVVLKEGLTGESVKKRLDTIFRL 680
           +  V G++ DYGNP  QV++      + +     +   + +    T +  ++RL   F L
Sbjct: 585 SATVVGIFSDYGNPMGQVIIGINALNQHYPDVEKLRYGLRVAPDDTAD-FRRRLIDDFGL 643

Query: 681 DADRIFDNTNIHSHAMRVFDRTFSIAGTLGNITLFIAVCGIFFSTLAGETSRLRHISLLR 740
             D I D  ++   +  +F++TF++ G L  +TL +A   +F S L   + RL  ++ + 
Sbjct: 644 PQDNIVDQASLKRQSAAIFEQTFAVTGALNILTLAVAGFAMFSSLLTLASLRLPQLAPVW 703

Query: 741 CLGVSGKELVLIGGMQLFVFGAISLLIALPLGLTLAKLVIDVVIKHSFGWTMQLQMVPGE 800
            LG+  ++L  +  ++      ++ + A+P+GL LA +++ ++   +FGW + + + P E
Sbjct: 704 ALGLRRRDLAWLEFIRALTLWFVTFVAAIPVGLALAWVLLTIINVEAFGWRLPMILFPWE 763

Query: 801 YVYTVVWSMMALILAGALPIIRLARKSPMKSLR 833
           +V   + ++ A +++  +P+ +LA+ +P   LR
Sbjct: 764 WVKLGLVALFAAVISVLIPVRQLAKTAPADLLR 796