Pairwise Alignments

Query, 836 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 420 a.a., ABC transporter membrane spanning protein from Agrobacterium fabrum C58

 Score =  144 bits (363), Expect = 1e-38
 Identities = 123/387 (31%), Positives = 182/387 (47%), Gaps = 21/387 (5%)

Query: 20  MLWPVVKALLGHYRRYPLQICLVWLGLTLGVSLLVGVTAINHHARQSYEHGEKLFSNPLP 79
           M W   +ALL H+R  PLQ+  + +G+TL   L   V AIN  AR SY+    + +    
Sbjct: 1   MNWTAFRALLSHWRYRPLQLITLIVGVTLATGLWCAVQAINAEARASYDRAASVLAQNQL 60

Query: 80  YRIRSKHIANKIPQGLYIQLRRDGFQQCVPFD-DYRFSTTSGLDLILQGIDPVALLSIDN 138
            ++ +K    +I    Y +LRR G       + DYRF TT    + L GIDP+ + S   
Sbjct: 61  DQLVAKD-GGRISSQTYARLRRTGLHVSPIIEGDYRFGTTR---IRLIGIDPLTMPSEGM 116

Query: 139 GKPLAQQSGLQLM--NPPYPVMVSQELAKLQDWQEGDYIALTDGSQLGPIVIDRHNQVTG 196
               +  SGL L    P   ++     A L+D         T G  L      R +   G
Sbjct: 117 VPAPSDPSGLVLFIQTPGQMIVSPATAATLKD---------TSGLSLKA----RADLPDG 163

Query: 197 MRVVADLSLVRMLKKGSGLTVIACADMPPAKLDKLKKSLPNGLTLTRSTRSELESLTQAF 256
              V   +  R+LK+   L+ +  +      L  +    P        +R ++  LT +F
Sbjct: 164 AAFVDISTADRLLKRNGDLSRLIVSPSQDPDLPTIGNIAPELSLEHARSRPDVARLTDSF 223

Query: 257 HLNLTAMGMLAFLVGIFIFYQAMSLSMVQRQPLVGTLRQIGVNGWQLAKALLIELLVLVL 316
           HLNLTA G LAF+VG+FI Y A  LS  QR+    T+R +GV+   L   L+IE  +  L
Sbjct: 224 HLNLTAFGFLAFVVGLFIVYSATGLSFEQRRGSFRTMRSLGVSLRSLTAMLVIETALFAL 283

Query: 317 VSWVCGNVLGLLLANQLIPSVASSLGYLYNANVDLAIGWDWSWSSYSLLMALLAAFASCT 376
           VS   G V+G ++A+ L+P VA++L  LY A+V  ++     W    L MAL+    S  
Sbjct: 284 VSGALGIVVGYVVASALLPGVAATLRGLYGASVAGSLSLRPEWWIAGLAMALVGTGLSSL 343

Query: 377 WPLVRLLRSQPIRLSARLSLVRFAGKE 403
             L+R+ R  PI  +A+    R+  +E
Sbjct: 344 QHLLRVWR-MPILSTAQGGRGRWCPRE 369