Pairwise Alignments

Query, 382 a.a., Na+/H+ antiporter NhaA from Vibrio cholerae E7946 ATCC 55056

Subject, 397 a.a., pH-dependent sodium/proton antiporter from Pseudomonas simiae WCS417

 Score =  405 bits (1041), Expect = e-117
 Identities = 207/377 (54%), Positives = 264/377 (70%), Gaps = 8/377 (2%)

Query: 8   FFKMESAGGILLVIAAAIAMVIANSAMGEGYQAFLHTYVFGM--------SVSHWINDGL 59
           FF++E+A G+LL+ AAA+A++I NS +   Y AFL   V               WINDGL
Sbjct: 10  FFQLEAASGLLLIAAAALALIINNSPLSHLYAAFLDVPVVAQIGALKIAKPALLWINDGL 69

Query: 60  MAVFFLLIGLEVKRELLEGALKSRETAIFPAIAAVGGMLAPALIYVAFNFNDPAAIQGWA 119
           MA+FFLLIGLEVKRELL+G L      + P  AA+GGM+ PALIY A N + PAA+ GWA
Sbjct: 70  MALFFLLIGLEVKRELLDGHLSKPSQVVLPGAAAIGGMVVPALIYWAINKDYPAALSGWA 129

Query: 120 IPAATDIAFALGIMALLGKRVPVSLKVFLLALAIIDDLGVVVIIALFYSSDLSTIALTIG 179
           IP ATDIAFALG++ALLGKRVPVSLK+FL+ LAIIDDLG +++IA+FYS+DLS  AL   
Sbjct: 130 IPMATDIAFALGVLALLGKRVPVSLKLFLMTLAIIDDLGAIIVIAVFYSADLSGAALAGA 189

Query: 180 FIMTGVLFMLNAKHVTKLSIYLVAGLILWIAVLKSGVHATLAGVVIGFAIPLKGNKGEHS 239
                 L  +N   V KL  YL+ GLILW+ VLKSGVHATLAGV + F IP++    E S
Sbjct: 190 AACLVALIAMNRLGVIKLGPYLIIGLILWVCVLKSGVHATLAGVTLAFCIPMRTKNAEPS 249

Query: 240 PLKHLEHALHPYVAFAILPVFAFANAGISLQGVSLAGLTSMLPLGVALGLFLGKPLGIFS 299
           PL  LEHALHP+VA+ ILP+FAFANAG+SL GVSL   T  +P+G+A GL +GK +G+F 
Sbjct: 250 PLLTLEHALHPWVAYGILPLFAFANAGVSLTGVSLESFTHHVPMGIAAGLLIGKTVGVFG 309

Query: 300 FSWAAVKLGVAKLPEGINFKHIFAVSVLCGIGFTMSIFISSLAFGQANEAYDTYARLGIL 359
            +W A+K G+A LP G N+  +F V++LCGIGFTMS+F+ SLAF      +    R+GIL
Sbjct: 310 LTWLAIKTGLAALPNGANWGQVFGVAILCGIGFTMSLFVGSLAFVPGASEFAGEDRMGIL 369

Query: 360 MGSTTAALLGYSLLRLS 376
            GS  AA +GY++  ++
Sbjct: 370 TGSILAACIGYAVTAMA 386