Pairwise Alignments

Query, 212 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 344 a.a., Outer membrane porin F from Pseudomonas sp. RS175

 Score = 99.0 bits (245), Expect = 1e-25
 Identities = 56/157 (35%), Positives = 87/157 (55%), Gaps = 4/157 (2%)

Query: 38  PTPLANQIADLQDDDRDGVINARDLCPDTPKGSEIDNDGCGTFVKSSQMQQLHILFANDS 97
           P P   ++    D D DGV +  D CPDTP    +D DGC    +  +++ L + F  D 
Sbjct: 186 PVPAPAEVCS--DSDNDGVCDNVDKCPDTPANVTVDADGCPAVAEVVRVE-LDVKFDFDK 242

Query: 98  SSIEPAFLTQIRQMAEFLQTYPSTSIELQGYASKVGSAEHNLALSKQRSEAVRDQLL-RY 156
           S ++      I+ +A+F++ YPSTS  ++G+   VG+  +N  LS++R++AV++ L  +Y
Sbjct: 243 SVVKENSYGDIKNLADFMKQYPSTSTTVEGHTDSVGTDAYNQKLSERRAKAVKEVLTNQY 302

Query: 157 GVAPERVNIVGYGDSVLEVEGTDDVSHARNRRVTATV 193
           GV   RV  VGYG+S    +   +   A NRRV A V
Sbjct: 303 GVESSRVQSVGYGESRPVADNATEAGRAVNRRVEAQV 339