Pairwise Alignments

Query, 212 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 398 a.a., Outer membrane porin F precursor from Alteromonas macleodii MIT1002

 Score =  110 bits (276), Expect = 3e-29
 Identities = 52/147 (35%), Positives = 93/147 (63%), Gaps = 1/147 (0%)

Query: 48  LQDDDRDGVINARDLCPDTPKGSEIDNDGCGTFVKSSQMQQLHILFANDSSSIEPAFLTQ 107
           ++D D DGV++++D+CPDTP G ++D  GC  F + +    L +LF N+S+ ++     +
Sbjct: 242 IKDSDNDGVVDSKDMCPDTPAGVKVDAKGCTVFDEETVEITLRVLFDNESAVVKMPKDPE 301

Query: 108 IRQMAEFLQTYPSTSIELQGYASKVGSAEHNLALSKQRSEAVRDQLL-RYGVAPERVNIV 166
           I + AEF++ YPST+  ++G+ S  GS  +N+ LSK+R+   ++ ++  YG+   R+  +
Sbjct: 302 ISEFAEFMKQYPSTTAVIEGHTSAPGSEAYNMDLSKRRAANFKEVMVDMYGIEGSRLETI 361

Query: 167 GYGDSVLEVEGTDDVSHARNRRVTATV 193
           GYG++ L   G +  +H  NRR++ TV
Sbjct: 362 GYGETQLLDNGKNAEAHRVNRRISVTV 388



 Score = 39.7 bits (91), Expect = 8e-08
 Identities = 14/29 (48%), Positives = 21/29 (72%)

Query: 49  QDDDRDGVINARDLCPDTPKGSEIDNDGC 77
           +D D DGV++++D CP TP G  +D +GC
Sbjct: 182 KDSDNDGVVDSKDQCPMTPAGVRVDANGC 210