Pairwise Alignments

Query, 445 a.a., agglutination protein from Vibrio cholerae E7946 ATCC 55056

Subject, 510 a.a., TolC family outer membrane protein from Variovorax sp. OAS795

 Score =  109 bits (272), Expect = 2e-28
 Identities = 104/434 (23%), Positives = 190/434 (43%), Gaps = 21/434 (4%)

Query: 12  LPLKAIA---LAIALSNPVSAQTLEQAVSITLASNPELKSAFNQFKSREYDAEASSGAYL 68
           LPL A      A  L+ P   QTL +        +   + A  Q+++    A  +    L
Sbjct: 8   LPLSAALASLFATLLALPAQGQTLNELYDSARGFDATYQGARAQYEATVARAAQAKAGIL 67

Query: 69  PKIDLDAGIGYEAINPAESSG-NRNT----DLTRKDATLTLTQLIWDGS--ATLNDMDRT 121
           P + L AG+   A++    +G  R T    D T ++  +  TQ ++  +  AT     R 
Sbjct: 68  PAVGLTAGVSRNALDIDTLTGPGRGTTTPRDFTTQNIGVNATQPLYRPANWATYEQGKRQ 127

Query: 122 AAEAEADRYQLLADASNMALEVAKIYLDATKASEILTLSENNLAIHKDIYRDIKKRADSG 181
           A  AEA    L A   ++ + V++ Y D   + + LTL         +     K+  + G
Sbjct: 128 AEIAEA---VLTAAEQDLIVRVSQAYFDVLASQDSLTLVRAQKVAVAEQLASAKRNFEVG 184

Query: 182 IGSTADVTQVEARLAKAHSNLVAAQNNLFDIYTQFRRLVGQE---PVSLEFPRADQNAIP 238
             +  D  + +AR     +  +AA+N+L        +LVG+    PV L  P     A+P
Sbjct: 185 TSTITDTREAQARYDLVIAQEIAAENDLQVKKVVLDQLVGRPGSVPVPLAQPVVLPTAMP 244

Query: 239 PTLENALNMAQENHPVIKVAQADVDAARFQYKQSKAPNYPTLSFEAAQSWRNDAGGIEGS 298
             +E  +  A++ HP I+ A+  +D A  + ++++A + PTL      +   +  G   S
Sbjct: 245 ANIEAWVAQAEDVHPSIRQARLGLDVAGLEIRKAEAGHKPTLDANLGYNVTRNPQGTSTS 304

Query: 299 S-----DELSAMLRLRYNLYNGGSDSDRTESAAYQLNRSKDLREKTFRTVEEGLRLSWSA 353
           +     +  S  +     L+ G +  +R +      ++S+ + E T R+V +  R ++  
Sbjct: 305 TVGTRINAASVGVVFNLPLFAGFATENRIKETLALEDQSRSVLEGTRRSVAQATRAAYLG 364

Query: 354 LDLTLQQKQFLADHVDSASKTVVSYRKQYQIGQRTLLDLLNTENELFEARKDYLDARYAE 413
           L     Q + L     S+   + + R  YQ+G R  +D+LN++++LF+ ++D   ARY  
Sbjct: 365 LVSGAGQVKALEAAEASSQSALDANRLGYQVGVRINIDVLNSQSQLFQTKRDLAQARYNV 424

Query: 414 QYAKYRVMNASGNL 427
                ++  A+G L
Sbjct: 425 LLGNLKLRQANGTL 438