Pairwise Alignments

Query, 445 a.a., agglutination protein from Vibrio cholerae E7946 ATCC 55056

Subject, 471 a.a., Outer membrane efflux protein from Pseudomonas putida KT2440

 Score = 74.7 bits (182), Expect = 6e-18
 Identities = 93/414 (22%), Positives = 177/414 (42%), Gaps = 27/414 (6%)

Query: 43  NPELKSAFNQFKSREYDAEASSGAYLPKIDLDAGIGYEAINPAESSGNRNTDLTRKDATL 102
           +P + +A+ + +S      A+ G+ LP++  +A                NT+      +L
Sbjct: 55  DPRVLAAYARARSASEQQRAALGSLLPQVSANANSSRILRKNEAERDLYNTETY----SL 110

Query: 103 TLTQLIWDGSA------TLNDMDRTAAEAEADRYQLLADASNMALEVAKIYLDATKASEI 156
           +LTQ +++  A      + +  D+   EAE      LA+A+   +++AK Y  A  A + 
Sbjct: 111 SLTQYLYNKPAWERYQKSKSVKDQKGHEAE----DTLAEAT---VDLAKRYFVALAADDE 163

Query: 157 LTLSE-NNLAIHKDIYRDIKKRADSGIGSTADVTQVEARLAKAHSNLVAAQNNLFDIYTQ 215
           L L +    A  K++ R +    +  +    D   ++AR+    +  V A+N +      
Sbjct: 164 LALVQAERRATQKNLDR-VSSMFERQMAKITDKLDMQARVDFLLAQEVEARNQVQVSREA 222

Query: 216 FRRLVGQ---EPVSLEFPRADQNAIPPTLENALNMAQENHPVIKVAQADVDAARFQYKQS 272
              +VG+   EP+S         A    L+N +  A EN+P++K  Q+  +AA    ++ 
Sbjct: 223 LAEIVGRPITEPLSRVRNDVALQAPTRPLQNWVTQAVENNPLLKSYQSGAEAANAAVREG 282

Query: 273 KAPNYPTLSFEAAQSWRNDAGGIEGS---SDELSAMLRLRYNLYNGGSDSDRTESAAYQL 329
           K  +YP LS  +  + +ND G        SD   A   ++  +Y+GGS S R        
Sbjct: 283 KGEHYPQLSL-SLSAQQNDQGYDNTQAPRSDSYVASFGVKIPIYSGGSTSARVRGLYDDQ 341

Query: 330 NRSKDLREKTFRTVEEGLRLSWSALDLTLQQKQFLADHVDSASKTVVSYRKQYQIGQRTL 389
             +++  E   R V +    ++      +++ +   + + SA  + V+ +K +  G    
Sbjct: 342 LAAEEQLEGVRRQVVKETTTAYLTAQAAVEKIRANRNALSSAQHSSVAAQKAFTFGVVNA 401

Query: 390 LDLLNTENELFEARKDYLDARYAEQYAKYRVMNASGNLLDALRVDIPQEWTAKV 443
           +D+L      F+AR+D L  +Y +      ++N     L+   VD    W + V
Sbjct: 402 VDVLTAVQNEFKARRDLLKTQY-DFITNLFLLNRWAGELNQESVDNVNVWLSPV 454