Pairwise Alignments

Query, 445 a.a., agglutination protein from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., Outer membrane protein TolC from Pseudomonas sp. DMC3

 Score = 75.1 bits (183), Expect = 4e-18
 Identities = 82/337 (24%), Positives = 148/337 (43%), Gaps = 18/337 (5%)

Query: 115 LNDMDRTAAEAEADRYQLLAD------ASNMALEVAKIYLDATKASEILTLSENNLAIHK 168
           L D +  AA  +     L AD      +  + + V   Y  A  A + + +++     ++
Sbjct: 110 LLDYEAYAAYRKGVAQSLFADEAFRGKSQELLVRVLDNYTKALFAQDQIDIAQAKKKAYE 169

Query: 169 DIYRDIKKRADSGIGSTADVTQVEARLAKAHSNLVAAQNNLFDIYTQFRRLVGQEPVSLE 228
             ++  +     G G+  D+ + E+R   A +  + A+N       +   LVG   V + 
Sbjct: 170 QQFQQNEHMFKQGEGTRTDILEAESRYELATAEEIEARNEQDAALRELGALVGVPAVDIG 229

Query: 229 --FPRADQ----NAIPPTLENALNMAQENHPVIKVAQADVDAARFQYKQSKAPNYPTLS- 281
              P   Q       P   +    +A  N+P +   +  V+ AR++ ++++A + P +S 
Sbjct: 230 DLAPLGQQFQTFTLQPANFDTWHELAISNNPNLASQRQAVEVARYEVERNRAGHLPKVSA 289

Query: 282 FEAAQSWRNDAGGIEGSSDELSAM-LRLRYNLYNGGSDSDRTESAAYQLNRSK-DLREKT 339
           + + +   +++G       E + + L +   LY GG  S  T  A+  + +++ +L  KT
Sbjct: 290 YASMRDNESESGNTYNQRYETNTIGLEVSVPLYAGGGVSASTRQASRTMEQAEYELDGKT 349

Query: 340 FRTVEEGLRLSWSALDLTLQQKQFLADHVDSASKTVVSYRKQYQIGQRTLLDLLNTENEL 399
             T+ E LR  +SA    + + +     + SA   VVS R+    G+RT LD LN E +L
Sbjct: 350 RETLIE-LRRQFSACLSGVSKLRAYQKALKSAEALVVSTRQSILGGERTNLDALNAEQQL 408

Query: 400 FEARKDYLDARYAEQYAKYRVMNASGNL--LDALRVD 434
           F  R+D   ARY    A  ++   +G L   D  RVD
Sbjct: 409 FTTRRDLAQARYDYLMAWTKLHYYAGTLNEQDLARVD 445



 Score = 32.7 bits (73), Expect = 2e-05
 Identities = 43/221 (19%), Positives = 79/221 (35%), Gaps = 14/221 (6%)

Query: 9   LKGLPLKAIALAIALSNPVSAQTLEQAV-----SITLASNPELKSAFNQFKSREYDAEAS 63
           L G+P   I     L       TL+ A       + +++NP L S     +   Y+ E +
Sbjct: 220 LVGVPAVDIGDLAPLGQQFQTFTLQPANFDTWHELAISNNPNLASQRQAVEVARYEVERN 279

Query: 64  SGAYLPKIDLDAGIGYEAINPAESSGNRNTDLTRKDATLTLTQLIWDG---SATLNDMDR 120
              +LPK+   A +     N +ES    N         L ++  ++ G   SA+     R
Sbjct: 280 RAGHLPKVSAYASM---RDNESESGNTYNQRYETNTIGLEVSVPLYAGGGVSASTRQASR 336

Query: 121 TAAEAEADRYQLLADASNMALEVAKIYLDATKASEILTLSENNLAIHKDIYRDIKKRADS 180
           T  +AE   Y+L        +E+ + +         L   +  L   + +    ++    
Sbjct: 337 TMEQAE---YELDGKTRETLIELRRQFSACLSGVSKLRAYQKALKSAEALVVSTRQSILG 393

Query: 181 GIGSTADVTQVEARLAKAHSNLVAAQNNLFDIYTQFRRLVG 221
           G  +  D    E +L     +L  A+ +    +T+     G
Sbjct: 394 GERTNLDALNAEQQLFTTRRDLAQARYDYLMAWTKLHYYAG 434