Pairwise Alignments

Query, 445 a.a., agglutination protein from Vibrio cholerae E7946 ATCC 55056

Subject, 485 a.a., RND efflux system, outer membrane lipoprotein CmeC from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 69.7 bits (169), Expect = 2e-16
 Identities = 95/419 (22%), Positives = 171/419 (40%), Gaps = 40/419 (9%)

Query: 32  LEQAVSITLASNPELKSAFNQFKSREYDAEASSGAYLPKIDLDAGIGYEAINPAESSGNR 91
           L++ ++I L +N +L+ A    ++            LP + +   +      PA+ S   
Sbjct: 70  LQELIAIALRNNRDLRKAGLNVEAARALYRIQRAEMLPTLGIATAMDASR-TPADLSVMD 128

Query: 92  NTDLTRK----DATLTLTQLIWDGSATLNDMDRTAAEAEADRYQLLADASNMALEVAKIY 147
            +++ R+     AT      +W    +L+D    A  A  + Y  +A   ++  EVA  +
Sbjct: 129 ESEINRRYEAAGATTAWELDLWGRVRSLSDQALAAYMALDETY--IAARMSLVSEVASAW 186

Query: 148 LDATKASEILTLSENNLAIHKDIYRDIKKRADSGIGSTADVTQVEARLAKAHSNLVAAQN 207
           L      E+L L+E+ LA  K  Y    + A +G  +  D+   E  L  A  N  A   
Sbjct: 187 LTLRADRELLRLTEDTLAAQKSSYTLTTQLARTGNATQLDLRMAEIALRSAEINRAAYTR 246

Query: 208 NLFDIYTQFRRLVGQEPVSLEFPR-------ADQNAIPPTLENAL-NMAQENHPVIKVAQ 259
            L         L+GQ P++ E  R         + AIP TL   L +      P I+ A+
Sbjct: 247 QLARDRNALELLLGQ-PLTPELSRRLNEAVTLTEGAIPTTLPGGLPSDLLVRRPDIRAAE 305

Query: 260 ADVDAARFQYKQSKAPNYPTLSF--EAAQSWRNDAGGIEGSSDELSAMLRLRYNLYNGG- 316
             +  A  +   ++A  +PT+S    A  +  + +G  E  S     + ++   L++GG 
Sbjct: 306 YRLRGANARIGAARAAFFPTISLTGSAGTASASLSGLFEPGSGSWRFLPQITLPLFHGGA 365

Query: 317 --SDSDRTE-SAAYQLNRSKDLREKTFRTVEEGLRLSWSALDLTLQQKQFLADHVDSASK 373
             +D DR       ++ R +++ ++ FR V +G           L  ++ L D V S  +
Sbjct: 366 LRADLDRAHVQKQIEIARYENVIQQAFRDVADG-----------LAGQRTLNDQVQSEQR 414

Query: 374 TVVSYRKQYQI-------GQRTLLDLLNTENELFEARKDYLDARYAEQYAKYRVMNASG 425
            V + +  Y++       G    L LL+T   L+ A++  +  R  +Q     +  A G
Sbjct: 415 AVEASQIAYELAGLRFQEGVDDYLTLLDTHRMLYGAQQRLVRTRLMQQLNIINLYKALG 473



 Score = 28.5 bits (62), Expect = 5e-04
 Identities = 15/47 (31%), Positives = 25/47 (53%)

Query: 239 PTLENALNMAQENHPVIKVAQADVDAARFQYKQSKAPNYPTLSFEAA 285
           P L+  + +A  N+  ++ A  +V+AAR  Y+  +A   PTL    A
Sbjct: 68  PLLQELIAIALRNNRDLRKAGLNVEAARALYRIQRAEMLPTLGIATA 114