Pairwise Alignments

Query, 445 a.a., agglutination protein from Vibrio cholerae E7946 ATCC 55056

Subject, 489 a.a., Type I secretion outer membrane protein, TolC precursor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 97.4 bits (241), Expect = 9e-25
 Identities = 106/419 (25%), Positives = 185/419 (44%), Gaps = 34/419 (8%)

Query: 29  AQTLEQAVSITLASNPEL-KSAFNQFKSREYDAEASSGAYLPKIDLDAGIGYEAINPAES 87
           A+ L Q       SNPEL KSA ++  + E   EA S   LP++ L A   Y   N    
Sbjct: 22  AENLMQVYQQARLSNPELRKSAADRDAAFEKINEARS-PLLPQLGLGADYTYS--NGYRD 78

Query: 88  SGNRNTDLTRKDATLTLTQLIWDGSATLN-DMDRTAAEAEADRYQLLADASNMALEVAKI 146
           +   N++ T   A+L LTQ ++D S      +   AA  +   YQ   D   + L  A  
Sbjct: 79  ANGINSNET--SASLQLTQTLFDMSKWRGLTLQEKAAGIQDVTYQ--TDQQTLILNTANA 134

Query: 147 YLDATKASEILTLSENNLAIHKDIYRDIKK---RADSGIGSTADVTQVEARLAKAHSNLV 203
           Y     A ++L+ ++   A  + IYR + +   R + G+ +  DV    A+     +N V
Sbjct: 135 YFKVLNAIDVLSYTQ---AQKEAIYRQLDQTTQRFNVGLVAITDVQNARAQYDTVLANEV 191

Query: 204 AAQNNLFDIYTQFRRLVGQ-----EPVSLEFPRADQNAIPPTLENALNMAQENHPV-IKV 257
            A+NNL +   + R++ G        +++E  + D+    P   NAL    EN  + +  
Sbjct: 192 TARNNLDNAVEELRQVTGNYYPELASLNVEHFKTDK----PKAVNALLKEAENRNLSLLQ 247

Query: 258 AQADVDAARFQYKQSKAPNYPTLSFEAAQ---------SWRNDAGGIEGSSDELSAMLRL 308
           A+   D AR Q +Q++  + PTL+  A+          S  N     + +  +    L  
Sbjct: 248 ARLSQDLAREQIRQAQDGHLPTLNLTASTGISDTSYSGSKTNSTQYDDSNMGQNKIGLNF 307

Query: 309 RYNLYNGGSDSDRTESAAYQLNRSKDLREKTFRTVEEGLRLSWSALDLTLQQKQFLADHV 368
              LY GG  + + + A Y    + +  E   R+V + +R S++ ++ ++         V
Sbjct: 308 SLPLYQGGMVNSQVKQAQYNFVGASEQLESAHRSVVQTVRSSFNNINASISSINAYKQAV 367

Query: 369 DSASKTVVSYRKQYQIGQRTLLDLLNTENELFEARKDYLDARYAEQYAKYRVMNASGNL 427
            SA  ++ +    Y +G RT++D+L+    L++A++   +ARY     +  +  A G L
Sbjct: 368 VSAQSSLDAMEAGYSVGTRTIVDVLDATTTLYDAKQQLANARYTYLINQLNIKYALGTL 426