Pairwise Alignments

Query, 445 a.a., agglutination protein from Vibrio cholerae E7946 ATCC 55056

Subject, 488 a.a., outer membrane channel protein TolC from Erwinia tracheiphila SCR3

 Score = 98.2 bits (243), Expect = 5e-25
 Identities = 106/436 (24%), Positives = 190/436 (43%), Gaps = 29/436 (6%)

Query: 10  KGLPLKAIALAIA-LSNPVSAQTLEQAVSITLASNPELKSAFNQFKSREYDAEASSGAYL 68
           K LPL  I L++  LS    A+ L Q       SNP+L+S+     +       +    L
Sbjct: 3   KLLPL-LIGLSLGGLSAASQAENLLQIYQQARLSNPDLRSSAADRDAAFEKINEARSPLL 61

Query: 69  PKIDLDAGIGYEAINPAESSGNRNTDLTRKDATLTLTQLIWDGSA--TLNDMDRTAAEAE 126
           P++ L A   Y   N    SG  +++ T    +L LTQ I+D S   TL   ++ A+  +
Sbjct: 62  PQLGLGADYTYN--NGYRDSGGLHSNTT--SGSLQLTQTIFDMSKWRTLTLQEKIASIQD 117

Query: 127 ADRYQLLADASNMALEVAKIYLDATKASEILTLSENNLAIHKDIYRDIKKRADS---GIG 183
              YQ       + L  A  Y +   A + L+ +E   A  + IYR + + A     G+ 
Sbjct: 118 VT-YQTAQQT--LILNTATAYFNVLNAIDTLSYTE---AQKQSIYRQLDQTAQRFNVGLV 171

Query: 184 STADVTQVEARLAKAHSNLVAAQNNLFDIYTQFRRLVGQEPVSLEFPRAD--QNAIPPTL 241
           +  DV    ++     ++ V A+NNL +     R++ G   ++L     D  +   P  +
Sbjct: 172 AITDVQNARSQYDSVLASEVTARNNLDNNLETLRQVAGNYYLTLASLNVDSFKTEKPQPV 231

Query: 242 ENALNMAQENHPVIKVAQADVDAARFQYKQSKAPNYPTLSFEAAQSWRNDAGG------I 295
              L  A+  +  +  A+ + D AR Q + ++  + PTL   A+    N   G       
Sbjct: 232 NALLKEAESRNLSLLSARLNQDLAREQIRSAETGHMPTLDLTASTGLSNSKYGGRRANQS 291

Query: 296 EGSSDELSAM----LRLRYNLYNGGSDSDRTESAAYQLNRSKDLREKTFRTVEEGLRLSW 351
             S+D ++      L     LY GG+ + + + A Y    + +  E   R   + +R S+
Sbjct: 292 SSSTDSIAGSNQVGLSFSLPLYAGGAVTSQVKQAQYAYVAASEQLESAHRAAVQTVRSSF 351

Query: 352 SALDLTLQQKQFLADHVDSASKTVVSYRKQYQIGQRTLLDLLNTENELFEARKDYLDARY 411
           + ++ ++         V SA  ++ +    YQ+G RT++D+L+  + L+ A++   DARY
Sbjct: 352 NNVNASVSSINAYKQAVVSAQSSLDAMEAGYQVGTRTIVDVLDATSTLYNAKQQLADARY 411

Query: 412 AEQYAKYRVMNASGNL 427
           +    +  + +A G L
Sbjct: 412 SYMINELNIKSALGTL 427