Pairwise Alignments

Query, 405 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 425 a.a., transporter from Pseudomonas simiae WCS417

 Score = 86.7 bits (213), Expect = 1e-21
 Identities = 96/393 (24%), Positives = 169/393 (43%), Gaps = 33/393 (8%)

Query: 6   SPQYLKVTFALAFGSFLVFCNLYLFQPMLPYLANHFAVSETQINWLFAASTLALSLCLVP 65
           SP    V   LA    L   N+Y  QP+L  +A  FA+    +  + A + +   + L+ 
Sbjct: 6   SPLSGAVVLLLAVACGLSVANVYYAQPLLDAMAETFAMDHATVGIIIALTQVGYGVGLLL 65

Query: 66  WAVTSEAVGRRLVMLTGLFAMPVIGLAMLYAEQFWFLVLTRALMGVALAAFASVAVAYMV 125
                + + RR ++++ L    +  L + ++   ++L+   AL G+ LA  A V VA   
Sbjct: 66  LVPLGDLLNRRRLIVSQLLLSTLAVLMVGWSSSSFWLLAGMALTGL-LAVVAQVLVALAA 124

Query: 126 EELSPQAFGKAIGGYIAANSLGGITGRIAGGLLTDALGWQHAVVAMAIFTLLGALLVAYL 185
              SP+  G  +G   +   +G +  R   G + D  GW+   +  A  TLL A+L+  +
Sbjct: 125 HLASPEQRGHVVGLVTSGIVVGLLLARSVSGAMADLAGWRSVYLLSAGLTLLMAILLWRV 184

Query: 186 LPIQQHFKPQR-----GLFFHHNRALVKH---LQNRTLWLAMLIGGVNFALFVNLYSVMG 237
           LP  +   P R     G       +L K    L++R + LAMLI    FA    L++ + 
Sbjct: 185 LPSTE---PPRASGTYGALIRSVFSLFKEEKVLRDRAV-LAMLI----FAAGTVLWTPLV 236

Query: 238 FRLVAEPYSL---PIGIASL-----IFVCYLAGTLSSKLTANWNRRFSAIPGMMLGALIS 289
             L A P SL    IG+  L           AG L+ +  A W    + +       L+ 
Sbjct: 237 LPLSAPPLSLSHTQIGLFGLAGATGALGAAHAGRLADQGLAQWTSGTALL-------LML 289

Query: 290 MAGMLIALIE-AIPAMLVGLILISFGAFFTHTLAYAWVSQKATQAKATATALYLVHYYIG 348
           ++ + I   + ++ A+L+G+I+   G    H  + + +      A++   A Y++ Y +G
Sbjct: 290 LSWVAIGFTQSSLWALLLGVIVFDLGLQAVHVTSQSLIYAVRPNAQSRLVAGYMLFYSVG 349

Query: 349 GSLGGFYLLYCWQHGGWEMVTLGGLGLYFILFI 381
            +LG       +  GGW  V + G  +  +  +
Sbjct: 350 SALGSISATAMYAWGGWIGVCVLGAAINLLALV 382



 Score = 31.2 bits (69), Expect = 6e-05
 Identities = 39/160 (24%), Positives = 61/160 (38%), Gaps = 11/160 (6%)

Query: 33  MLPYLANHFAVSETQINWL-FAASTLALSLC----LVPWAVTSEAVGRRLVMLTGLFAMP 87
           +LP  A   ++S TQI     A +T AL       L    +     G  L+++  L +  
Sbjct: 236 VLPLSAPPLSLSHTQIGLFGLAGATGALGAAHAGRLADQGLAQWTSGTALLLM--LLSWV 293

Query: 88  VIGLAMLYAEQFWFLVLTRALMGVALAAFASVAVAYMVEELSPQAFGKAIGGYIAANSLG 147
            IG         W L+L   +  + L A   V    ++  + P A  + + GY+   S+G
Sbjct: 294 AIGFTQ---SSLWALLLGVIVFDLGLQA-VHVTSQSLIYAVRPNAQSRLVAGYMLFYSVG 349

Query: 148 GITGRIAGGLLTDALGWQHAVVAMAIFTLLGALLVAYLLP 187
              G I+   +    GW    V  A   LL  +     LP
Sbjct: 350 SALGSISATAMYAWGGWIGVCVLGAAINLLALVYWLATLP 389