Pairwise Alignments

Query, 362 a.a., ribosomal RNA large subunit methyltransferase F from Vibrio cholerae E7946 ATCC 55056

Subject, 338 a.a., 23S rRNA methyltransferase from Pseudomonas simiae WCS417

 Score =  320 bits (821), Expect = 3e-92
 Identities = 161/340 (47%), Positives = 220/340 (64%), Gaps = 11/340 (3%)

Query: 22  PVVKKQQTKQPPTHKVQGEEVAAVKSGLHPRNRHRGQYDFPALIKVVPELQSHVMKNPKG 81
           P   K   K+P T       V   ++ LHPRNRH G+YDFPALIK  PEL   V+ NP G
Sbjct: 4   PSTPKPPRKKPKTAATTKPVVPRKEATLHPRNRHTGRYDFPALIKTTPELAQFVIINPYG 63

Query: 82  QWTINFADPISVKLLNKALLVLHYGVTYWDIPEGFLCPPIPGRADYIHRVADLLLKGNPQ 141
           + +I+FA P +V++ N+ALL   YG+ +WDIP  +LCPP+PGRADY+H +ADLL   N  
Sbjct: 64  KESIDFASPDAVRVFNRALLKAFYGIQHWDIPADYLCPPVPGRADYVHFLADLLASTNDG 123

Query: 142 L--NHSQVRALDIGVGANCIYPIVGVTEYGWSWVGSDVDPVSIQQASLIVQSNSKLQGHI 199
                S V+ LDIG+GANC+YP++G  EY W+++GS+VDP+++  A  IVQSN  L   I
Sbjct: 124 KIPRGSIVKVLDIGMGANCVYPLIGYMEYRWNFLGSEVDPIAVAAARAIVQSND-LSKVI 182

Query: 200 ECRLQKNSQHIFNGIIGANERYTVTTCNPPFHASLADAQQGTQRKLTNLQANQRKKGRLA 259
           + R Q N + I  G++   ER+ +T CNPPFHAS+ +A +G++RK        R  G+ A
Sbjct: 183 QLRQQTNPKQILLGLLEPGERFDLTMCNPPFHASMDEATKGSERK-------WRALGK-A 234

Query: 260 TPTLSHSRLNFGGQKAELWCPGGEAAFIGKMAVESQQFAQQVLWFRTLISKGDNVRGMKK 319
            P      LNFGGQ AELWC GGEA F+ ++  ES  FA +VLWF TL+SK  N+  ++ 
Sbjct: 235 DPKRKLPVLNFGGQSAELWCEGGEARFVTQLIAESAHFAHKVLWFSTLVSKASNLPAIET 294

Query: 320 QLEKLGAQSIHVIEMAQGQKISRFIAWSFQNAEQRKLWWQ 359
            L+K G     V+EM+QGQK SRF+AW+FQ   ++++W Q
Sbjct: 295 ALKKAGVLESQVVEMSQGQKQSRFVAWTFQTKNEQQIWRQ 334