Pairwise Alignments

Query, 362 a.a., ribosomal RNA large subunit methyltransferase F from Vibrio cholerae E7946 ATCC 55056

Subject, 321 a.a., 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF from Serratia liquefaciens MT49

 Score =  328 bits (842), Expect = 9e-95
 Identities = 164/314 (52%), Positives = 206/314 (65%), Gaps = 11/314 (3%)

Query: 46  KSGLHPRNRHRGQYDFPALIKVVPELQSHVMKNPKGQWTINFADPISVKLLNKALLVLHY 105
           KSGLHPRNRHR +YDFPALI   P L+  V  N  G  +++FADP +VK+LN+ALL   Y
Sbjct: 11  KSGLHPRNRHRSRYDFPALIASCPALEPFVKPNAWGDISVDFADPAAVKMLNRALLQHFY 70

Query: 106 GVTYWDIPEGFLCPPIPGRADYIHRVADLLL--KGNPQLNHSQVRALDIGVGANCIYPIV 163
           G+ +WDIP  +LCPPIPGRADY+H +ADLL    G        V  LD+G+GANCIYPIV
Sbjct: 71  GIEHWDIPADYLCPPIPGRADYLHHLADLLATSNGGEIPRGKGVAILDVGIGANCIYPIV 130

Query: 164 GVTEYGWSWVGSDVDPVSIQQASLIVQSNSKLQGHIECRLQKNSQHIFNGIIGANERYTV 223
           G+ EYGW + GS++DPVS+  A +IV+ N  L+  +  RLQK  + IFNGIIG  E++  
Sbjct: 131 GLREYGWRFTGSEIDPVSLNSAKMIVEMNPTLRNSVRLRLQKQPEFIFNGIIGVAEKFDA 190

Query: 224 TTCNPPFHASLADAQQGTQRKLTNLQANQRKKGRLATPTLSHSRLNFGGQKAELWCPGGE 283
           T CNPPFH S  +AQ  T+RKL  L      KG +A   +     NFGG+  ELWC GGE
Sbjct: 191 TLCNPPFHGSEQEAQASTRRKLHKL-----GKGEVADKPVQ----NFGGKNNELWCEGGE 241

Query: 284 AAFIGKMAVESQQFAQQVLWFRTLISKGDNVRGMKKQLEKLGAQSIHVIEMAQGQKISRF 343
            AF+ KM  ES   AQ  LWF +LISK   +  +   L+  GA  +  IEMAQGQKISRF
Sbjct: 242 EAFVRKMVEESVSKAQNCLWFTSLISKNTTLPSIYHALKLAGAAEVRTIEMAQGQKISRF 301

Query: 344 IAWSFQNAEQRKLW 357
           +AW+F +AEQ+  W
Sbjct: 302 VAWTFHDAEQQAAW 315