Pairwise Alignments

Query, 362 a.a., ribosomal RNA large subunit methyltransferase F from Vibrio cholerae E7946 ATCC 55056

Subject, 308 a.a., 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF from Escherichia coli ECRC62

 Score =  317 bits (813), Expect = 2e-91
 Identities = 159/314 (50%), Positives = 206/314 (65%), Gaps = 13/314 (4%)

Query: 42  VAAVKSGLHPRNRHRGQYDFPALIKVVPELQSHVMKNPKGQWTINFADPISVKLLNKALL 101
           ++A K GLHPRNRH  +YD   L +V PEL+  +   P G+ +++FA+P++VK LNKALL
Sbjct: 1   MSAQKPGLHPRNRHHSRYDLATLCQVNPELRQFLTLTPAGEQSVDFANPLAVKALNKALL 60

Query: 102 VLHYGVTYWDIPEGFLCPPIPGRADYIHRVADLLLKGNPQLNHSQVRALDIGVGANCIYP 161
              Y V  WDIP+GFLCPP+PGRADYIH +ADLL + +  +  +    LDIGVGANCIYP
Sbjct: 61  AHFYAVANWDIPDGFLCPPVPGRADYIHHLADLLAEASGTI-PANASILDIGVGANCIYP 119

Query: 162 IVGVTEYGWSWVGSDVDPVSIQQASLIVQSNSKLQGHIECRLQKNSQHIFNGIIGANERY 221
           ++GV EYGW + GS+    ++  A  I+ SN  L   I  R QK S  IFNGII  NE+Y
Sbjct: 120 LIGVHEYGWRFTGSETSSQALSSAQAIISSNPGLNRAIRLRRQKESGAIFNGIIHKNEQY 179

Query: 222 TVTTCNPPFHASLADAQQGTQRKLTNLQANQRKKGRLATPTLSHSRLNFGGQKAELWCPG 281
             T CNPPFH S A A+ G++RK  NL  N+               LNFGGQ+ ELWC G
Sbjct: 180 DATLCNPPFHDSAAAARAGSERKRRNLGLNK------------DDALNFGGQQQELWCEG 227

Query: 282 GEAAFIGKMAVESQQFAQQVLWFRTLISKGDNVRGMKKQLEKLGAQSIHVIEMAQGQKIS 341
           GE  FI KM  ES+ FA+QV+WF +L+S+G+N+  + + L  +GA  +   EMAQGQK S
Sbjct: 228 GEVTFIKKMIEESKGFAKQVMWFTSLVSRGENLPPLYRALTDVGAVKVVKKEMAQGQKQS 287

Query: 342 RFIAWSFQNAEQRK 355
           RFIAW+F N EQR+
Sbjct: 288 RFIAWTFMNDEQRR 301