Pairwise Alignments

Query, 237 a.a., type IV pilus biogenesis/stability protein PilW from Vibrio cholerae E7946 ATCC 55056

Subject, 829 a.a., TPR domain protein, putative component of TonB system from Variovorax sp. SCN45

 Score = 49.7 bits (117), Expect = 2e-10
 Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 21/179 (11%)

Query: 14  AGCVTVTETAGNATQSDPTEMAEARIALGLGYLENGSMIKARENLEKALQHAPDYYRSQL 73
           AG +T  E A    Q+DP +  EA   L    +  G   +A   +++A++H+    R++ 
Sbjct: 203 AGALTSLEQA----QTDPPDF-EAAYLLSRALIACGRNEEAIAPMQRAMRHSTVEVRARA 257

Query: 74  -----SMAHYYE-------AVGENDSARKMYRTALSEHPKNGNVLNNFGTFLCKQGEYDT 121
                ++A  Y        A    D + ++Y+ AL   P+   +LNN G    +QG YD 
Sbjct: 258 LSDPEAVAALYGVCAALEGAAMRFDESEELYKLALESMPEQEALLNNLGATNFRQGRYDA 317

Query: 122 ADQYFRRAVE-QPYYYLISASYENAGLCALKAGKTDNAREYFKRAIDHDPNRLLSILQL 179
           A +  ++A+E  P   L      N G+  + AG+++ A   F++ +  DP+ + +++ L
Sbjct: 318 AIEVLKKALELHPRQVLARC---NLGVTYVMAGQSEAAIAEFEQCLRDDPDFMPAMVWL 373



 Score = 33.9 bits (76), Expect = 1e-05
 Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 5/113 (4%)

Query: 82  VGENDSARKMYRTALSEHPKNGNVLNNFGTFLCKQGEYDTADQYFRRAV-EQPYYYLISA 140
           +G    A ++Y   LS+ P++ + L+  G  L +QG    A  Y  RA+ + P+++    
Sbjct: 30  MGRFTEALRIYENLLSQFPEHADALHLTGEALYRQGRPKLALNYVNRAIAKSPHHFY--- 86

Query: 141 SYENAGLCALKAGKTDNAREYFKRAIDHDPNRLLSILQLTKMEIEAGDYTPAR 193
            +       +  G    A++  +RAI   PN   + + L+ +  +   +  AR
Sbjct: 87  -FNTRATIFMHMGLLAEAQQDLRRAIKALPNYPEAYVNLSAVYRQQKKFRQAR 138



 Score = 29.3 bits (64), Expect = 3e-04
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 12/95 (12%)

Query: 52  IKARENLEKALQHAPDYYRSQLSMAHYYEAVGENDSARKMYRTALSEHPKNGNVLNNFGT 111
           IKA  N  +A  +    YR Q       EA GE          A    P++    NN G 
Sbjct: 111 IKALPNYPEAYVNLSAVYRQQKKFRQAREAAGE----------ATRLAPQSPAAWNNAGA 160

Query: 112 FLCKQGEYDTADQYFRRAVEQPYYYLISASYENAG 146
              +Q   + A + FR+A++    Y+  A+++N G
Sbjct: 161 IDMEQDRLEEAVEQFRQALKLDSGYI--AAHKNIG 193