Pairwise Alignments

Query, 382 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., Domain of unknown function / Efflux ABC transporter, permease protein from Variovorax sp. SCN45

 Score = 59.7 bits (143), Expect = 1e-13
 Identities = 81/379 (21%), Positives = 143/379 (37%), Gaps = 16/379 (4%)

Query: 8   KAELKALFTNPVVVLTVFGGVVFYSFLYPLPYAKQIPREQTVSVVNLDQSQASFQLERMV 67
           + E   L T P  +  +    +   FL    ++  +P    + V++ D S  S QL R +
Sbjct: 12  RREFALLRTRPWDLAMISWVPLLAVFLIWWIFSAGLPERLPIGVLDQDHSSLSRQLVRFL 71

Query: 68  DATPQVKIVQRDHTIADAKQAFLDKKVAGILVIPEHFYKDLLLGKSPTLAYAGDASYFLV 127
           DATP +++VQ+     +  +A     V   + +P    +D+  G+   +    +A     
Sbjct: 72  DATPGLRVVQQYSDEGEMARALTSGAVDAAVQLPRDLSRDVKQGRVGQVVLLHNAQLGTH 131

Query: 128 YGTIVEGLAQAGGTLAAQTKVSRLVIEGEPMAFAAQHFSPTSANLKPTFNPRMGYVDYVV 187
              I   +  A  T++   +++     GE M  A     P  A++   FN    Y  ++ 
Sbjct: 132 SSLIQRDVRTAVATVSGGVELAVRNKRGESMTAARVSMEPIKASMVALFNTSTDYEQFLG 191

Query: 188 PAVFVLILQQTLIMAAGLMVGTQKQGH--GYWSRVAP------AKLL--LVRSFVLVAVY 237
            A+   +L    + A    VG + +    G W   AP      A L   L   F+ ++  
Sbjct: 192 AALIPALLHILAMTAGAWAVGRELRDRSIGAWLGAAPRWHEALAALAGKLALPFLSLSAV 251

Query: 238 YLLSLYYFGASFDLHGVNTLAKPNDLISLLLPFLLACNFVGIALGAVTPRRELVTLVVLI 297
            + ++ +  A    H V +L      +  L+ FL     +G    ++T            
Sbjct: 252 AIAAMVWITAGRGWHPVGSLGW---TLFALVVFLALSIALGAFASSLTRSLRTALSATGF 308

Query: 298 SSMPLIFTAGFIWPLEMIPAPLVWLAQCFPSTPAIQGFLGLNQMAAS--WSTIAPKWTLL 355
            + P     G  +PL  +P      A   P T  I+  +   QM A   +S   P W +L
Sbjct: 309 ITAPAFAFGGVGFPLVAMPFFARMWANLLPYTHYIRVQMEQLQMGAPVLYSVATPLWMVL 368

Query: 356 WAQALVWGGLAFYLLRRVR 374
              A++    A  L+R  R
Sbjct: 369 -GTAVLLAASAAALVRAAR 386