Pairwise Alignments

Query, 382 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 384 a.a., Domain of unknown function / Efflux ABC transporter, permease protein from Variovorax sp. SCN45

 Score =  177 bits (448), Expect = 6e-49
 Identities = 120/369 (32%), Positives = 180/369 (48%), Gaps = 12/369 (3%)

Query: 13  ALFTNPVVVLTVFGGVVFYSFLYPLPYAKQIPREQTVSVVNLDQSQASFQLERMVDATPQ 72
           A+  +  V+L +    + Y F YP PY  Q      V+VV+ D S  S Q+ R   A P+
Sbjct: 19  AVLRDKGVLLIMLIAPIIYGFFYPWPYGTQAVTRVPVAVVDQDHSALSRQIARFAMANPR 78

Query: 73  VKIVQRDHTIADAKQAFLDKKVAGILVIPEHFYKDLLLGKSPTLAYAGDASYFLVYGTIV 132
           + +      + +A+QA    ++ G  ++P    + +L G S  +   G+ +Y L+   ++
Sbjct: 79  LDVRMVTSDVHEAQQALWRGEIEGYALLPADLKRSVLRGTSAVVTIEGNGAYALLNKAVL 138

Query: 133 EGLAQAGGTLAAQTKVSRLVIEGEPMAFAAQHFSPTSANLKPTFNPRMGYVDYVVPAVFV 192
            G ++A GT++A  ++ +L   G+    AA+  SP +  L   FNP  GY  YVVPAV +
Sbjct: 139 YGFSEAVGTVSAGVEIRKLQAGGQSAVQAARSRSPLNTQLVALFNPTEGYGSYVVPAVAL 198

Query: 193 LILQQTLIMAAGLMVGTQKQGHGYWSRV----APAKLLLVRSFVLVAVYYLLSLYYFGAS 248
           LILQQTL+M A ++ GT       W+      A     L R   L    +L  L+YFG  
Sbjct: 199 LILQQTLLMGAAMLAGT-------WAEAGRLRATMGAWLGRLGALSGFGFLSGLFYFGWV 251

Query: 249 FDLHGVNTLAKPNDLISLLLPFLLACNFVGIALGAVTPRRELVTLVVLISSMPLIFTAGF 308
           F L        P   + LL  ++ A   +G+ LG     RE    V+L +++P+ F +GF
Sbjct: 252 FFLQDYPRGGNPLGAMVLLAFYVPAICTLGLLLGCWFRDRERALQVLLFTALPMAFLSGF 311

Query: 309 IWPLEMIPAPLVWLAQCFPSTPAIQGFLGLNQMAASWSTIAPKWTLLWAQALVWGGLAFY 368
            WP+E +P PL  L   FPST  IQG L LNQM A    + P   ++ A  L  G L  +
Sbjct: 312 SWPVEALPGPLQALRWVFPSTAGIQGSLRLNQMGAPLHDVLPYIGVMLALTLA-GLLTLW 370

Query: 369 LLRRVRQRT 377
           L    R  T
Sbjct: 371 LAATPRGNT 379