Pairwise Alignments

Query, 382 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 376 a.a., Efflux ABC transporter, permease protein from Sphingobium sp. HT1-2

 Score =  138 bits (347), Expect = 3e-37
 Identities = 106/375 (28%), Positives = 171/375 (45%), Gaps = 9/375 (2%)

Query: 7   FKAELKALFTNPVVVLTVFGGVVFYSFLYPLPYAKQIPREQTVSVVNLDQSQASFQLERM 66
           F A  +A+ ++    + +    + YSF YP  Y+ ++     V+VV+LD S AS  L R 
Sbjct: 6   FLATFRAVLSDRSAFMLIVVSTILYSFFYPSAYSGEVAVRIPVAVVDLDDSGASRSLVRR 65

Query: 67  VDATPQVKIVQRDHTIADAKQAFLDKKVAGILVIPEHFYKDLLLGKSPTLAYAGDASYFL 126
           + A  Q  +  R  +   A+          +++IPE F + +L G   T+A  G+ +Y L
Sbjct: 66  IAALQQADLAARPASPGAARLWLETTGAGAVVIIPEGFERHILNGAQGTVALYGNGAYLL 125

Query: 127 VYGTIVEGLAQAGGTLAAQTKVSRLVIEGEPMAFAAQHFSPTSANLKPTFNPRMGYVDYV 186
              T + G+  A  T+A +    + + +G P   A       S   +P FN R GY   V
Sbjct: 126 RSSTALSGIGLAVTTIAGEAASDQAMAQGAPARPA------LSLVQRPLFNTREGYGSTV 179

Query: 187 VPAVFVLILQQTLIMAAGLMVGTQKQGHGYWSRVAPAKLLLVRSFVLVAVYYLLSLYYFG 246
            P V  LI+ QTL+M   ++  T ++  G +    P++ L+  +     + +    YY G
Sbjct: 180 FPGVGFLIIHQTLLMGLTMLAATLRETLGRFR--LPSRTLIGIALAFFVIGWADVAYYAG 237

Query: 247 ASFDLHGVNTLA-KPNDLISLLLPFLLACNFVGIALGAVTPRRELVTLVVLISSMPLIFT 305
             F        A  P  LI     F+ A     +AL ++   RE    + + +S+ + F 
Sbjct: 238 FVFWFQDYPRAAGSPGALIVGGSLFVGATVAAALALASLFRTRERPLQLWMGTSLAIFFL 297

Query: 306 AGFIWPLEMIPAPLVWLAQCFPSTPAIQGFLGLNQMAASWSTIAPKWTLLWAQALVWGGL 365
           AG  WP E  PA L  LA+  P+T  I   +GLNQM AS +    +   L    LV+GGL
Sbjct: 298 AGLSWPAEATPAWLALLARLLPTTAGIHLMVGLNQMGASLAEQTREVLNLAILILVYGGL 357

Query: 366 AFYLLRRVRQRTAKP 380
           A++   ++     +P
Sbjct: 358 AWWRFTKISAPDLQP 372