Pairwise Alignments

Query, 382 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 395 a.a., ABC-type multidrug transport system, permease component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 86.3 bits (212), Expect = 1e-21
 Identities = 81/345 (23%), Positives = 147/345 (42%), Gaps = 17/345 (4%)

Query: 39  YAKQIPREQTVSVVNLDQSQASFQLERMVDATPQVKIVQRDHTIADAKQAFLDKKVAGIL 98
           +A  I R+  + V++ DQS  S  L RMVD +P V++       A+A     +++  G+L
Sbjct: 46  FAAGIARDLPIVVIDRDQSSLSRSLLRMVDESPGVRVAAAVGNEAEATAWLRERRAYGLL 105

Query: 99  VIPEHFYKDLLLGKSPTLAYAGDASYFLVYGTIVEGLAQAGGTLAAQTKVSRLVIEGEPM 158
           V+P  F  D+  G+S T+++  +  + +  G +   +  A  TL+A  +++     G   
Sbjct: 106 VVPASFQHDIGAGRSATVSWFYNGQFSVHAGGLTRDVRTAVSTLSAGIEMTARGKRGASA 165

Query: 159 AFAAQHFSPTSANLKPTFNPRMGYVDYVVPAVFVLILQQTLIMAAGLMVGTQ-------- 210
           A AA+ F P    L   +N    Y  ++V A+   +LQ  + +AA   VG +        
Sbjct: 166 AQAAEQFEPIRLRLGTLYNENANYESFLVLALIPSMLQIFVALAAITAVGRELRAGSVPQ 225

Query: 211 --KQGHGYWSRVAPAKLLLVRSFVLVAVYYLLSLYYFGASFDLHGVNTLAKPNDLISLLL 268
                 G W      KL++  +   V     +  + F   + + G   +     +++ L 
Sbjct: 226 WLASAGGRWHTAVAGKLVIPAAAFAVQAVLFVVFFGFVRGWAIEGSGLM-----IVAGLW 280

Query: 269 PFLLACNFVGIALGAVTPRRELVTLVVLISSMPLIFTAGFIWPLEMIPAPLVWLAQCFPS 328
             + A   +G+ + AVT             + P    +G  +PL  +PA     A+  P 
Sbjct: 281 LLIAAYLGLGLLMIAVTLTLRNALSAAAFVTAPAFAFSGQGYPLSAMPALARAWAEALPL 340

Query: 329 TPAIQGFLGLNQMA-ASWSTIAPKWTLLWAQALVWGGLAFYLLRR 372
           T  +Q   G + +A A W+       +L   A+V GG    +L++
Sbjct: 341 THYLQ-LQGKHWLAGAPWTYGVGDALVLLGFAVVSGGAGLLILKQ 384