Pairwise Alignments

Query, 382 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 385 a.a., hypothetical protein from Azospirillum sp. SherDot2

 Score =  197 bits (500), Expect = 5e-55
 Identities = 124/374 (33%), Positives = 190/374 (50%), Gaps = 11/374 (2%)

Query: 3   LFELFKAELKALFTNPVVVLTVFGGVVFYSFLYPLPYAKQIPREQTVSVVNLDQSQASFQ 62
           +F +F+ EL+ +FT   V          Y+  YP PY  +  R   + VV+ D + +S +
Sbjct: 4   VFTVFRHELRRIFTVRPVFSVFILAAAIYAVFYPQPYLTEALRNVPIVVVDRDGTSSSRE 63

Query: 63  LERMVDATPQVKIVQRDHTIADAKQAFLDKKVAGILVIPEHFYKDLLLGKSPTLAYAGDA 122
           + R +DAT  V +      +  A++A  ++ V+GIL+IP +F +DLL G+   +A   DA
Sbjct: 64  MIRRLDATSDVSVALVLPDLPSAQRAVYERAVSGILLIPGNFERDLLHGRPSPVALYADA 123

Query: 123 SYFLVYGTIVEGLAQAGGTLAAQTKVSRLVIEGEPMAFAAQHFSPTSANLKPTFNPRMGY 182
           SYFL+Y  I   ++    TL A+ + +RLV  G   A A     P      P FNP+ GY
Sbjct: 124 SYFLIYQRIAGAISAVARTLGAEVESARLVAAGVDPALAGAVVDPMPLTAVPLFNPQGGY 183

Query: 183 VDYVVPAVFVLILQQTLIMAAGLMVGT----QKQGHGYWSRVAPAKLLLVRSFVLVAVYY 238
             Y++PA F+LILQQ L++  GL+ GT     +   G  + V    +  +    L+  +Y
Sbjct: 184 ATYLLPAAFILILQQLLLIGTGLL-GTIPDPSRPRAGPLATVTGKYMAYLVPAALILPFY 242

Query: 239 LLSLYYFGASFDLHGVNTLAKPNDLISLLLPFLLACNFVGIALGAVTPRRELVTLVVLIS 298
           L++L Y      L+G+  L  P  ++   LPF LA N +G+   AV      V L     
Sbjct: 243 LIALPY------LYGIPRLGSPATVLLFALPFALAVNGLGLIASAVFRTPLAVQLATAAV 296

Query: 299 SMPLIFTAGFIWPLEMIPAPLVWLAQCFPSTPAIQGFLGLNQMAASWSTIAPKWTLLWAQ 358
            +P  F AGF WP E +P  +  +A+  PST AI G + + Q+ A  S +A  +  LWA 
Sbjct: 297 GLPFFFLAGFSWPQESMPDAVRLVARLLPSTSAIDGLVRVAQLGAPLSEVAEPFLTLWAL 356

Query: 359 ALVWGGLAFYLLRR 372
           A ++G +A  L  R
Sbjct: 357 AGLYGAIAVALAAR 370