Pairwise Alignments

Query, 382 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 408 a.a., hypothetical protein from Azospirillum sp. SherDot2

 Score = 90.9 bits (224), Expect = 6e-23
 Identities = 71/278 (25%), Positives = 122/278 (43%), Gaps = 25/278 (8%)

Query: 49  VSVVNLDQSQASFQLERMVDATPQVKIVQRDHTIADAKQAFLDKKVAGILVIPEHFYKDL 108
           V+V++ D S  S  + R VDATP   + +R   +A+ ++  L   V G+L+IP    +D+
Sbjct: 58  VAVLDFDGSDLSRTIVRTVDATPDAAVARRVADLAEGRRLILSGAVHGLLMIPRDLERDV 117

Query: 109 LLGKSPTLAYAGDASYFLVYGTIVEGLAQAGGTLAAQTKVSRLVIEGEPMAFAAQHFSPT 168
              + P + +  +A        ++ G++ A  T+AA  ++S    +G+PM  A    +P 
Sbjct: 118 KAARRPEVVFFYNAQTLSTGNLVLRGISNAVPTVAAGIRLSLRTAQGQPMDAAQASLAPI 177

Query: 169 SANLKPTFNPRMGYVDYVVPAVFVLILQQTLIMAAGLMVG-----------TQKQGHGYW 217
              +   FNP M Y  +++ A+   +LQ  +++A+   VG            ++ G G W
Sbjct: 178 PVQVHGLFNPTMNYAHFLLAALLPSLLQVVVVVASAYSVGLDVETRHRLAILRRLGGGLW 237

Query: 218 SRVAPAKLLLVRSFVLVAVYYLLSLYYFG-ASFDLHGVNTLAKPNDLISLLLP---FLLA 273
             +A            V  Y +LS+   G A   L G+  L        LLL    FLLA
Sbjct: 238 PALAGK----------VLPYTILSVMVLGLADSVLFGLLDLPLRGQRGILLLAGILFLLA 287

Query: 274 CNFVGIALGAVTPRRELVTLVVLISSMPLIFTAGFIWP 311
           C  +GI L  +     +   +  + + P     G  +P
Sbjct: 288 CQLLGILLALLLRSTAMAVSIGTLLTAPAFGFMGIGFP 325