Pairwise Alignments

Query, 382 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., putative multidrug ABC transporter permease YbhS from Azospirillum sp. SherDot2

 Score = 54.3 bits (129), Expect = 6e-12
 Identities = 72/333 (21%), Positives = 134/333 (40%), Gaps = 28/333 (8%)

Query: 44  PREQTVSVVNLDQSQASFQLERMVDATPQVKIVQRDHTIADAKQAFLDKKVAGILVIPEH 103
           P+    +++  D S  +  L   ++ +    I +   + A+  +   + +V   + IP  
Sbjct: 49  PKALPTALLVADSSPFARTLVAAMENSRYFAITRSAASEAEIDRLLAEGEVQFAVTIPPG 108

Query: 104 FYKDLLLGKSPTLAYAGDASYFLVYGTIVEGLAQAGGTLAAQTKVSRLVIEGE---PMAF 160
           F +DL  G  P L    DA+            A     L+A T ++R  +  +   P+A 
Sbjct: 109 FARDLQRGTRPVLLVEADAT----------DPAATSNALSALTAIARQALNPDLTGPLAS 158

Query: 161 AAQHFSPTSANLKPTFNPRMGYVDY-VVPAVFVLILQQTLIMAAGLMVGTQKQGHGYWSR 219
                 P    +   +NP  G   Y VVP +  ++L  T++M   L V T+++  G    
Sbjct: 159 LRTGLDPVDLRVHRRYNPE-GITQYNVVPGLMGVVLTMTMVMMTALAV-TRERERGTMEN 216

Query: 220 -----VAPAKLLLVRSFVLVAVYYLLSLYYFGASFDLHGVNTLAKPNDLISLLLPFLLAC 274
                V P +++L +    V V Y+  L    A+  L  V  +     L ++L+ F+ A 
Sbjct: 217 LLAMPVRPFEVMLGKIVPFVVVGYVQVLLIVVAARLLFDVPIVGSLGLLSAVLILFIAAN 276

Query: 275 NFVGIALGAVTPRRELVTLVVLISSMPLIFTAGFIWPLEMIPAPLVWLAQCFPST---PA 331
             VG     +   +     +     +P +  +GF++P   +P     + +  P T     
Sbjct: 277 LAVGFTFSTLARNQLQAMQMSFFFFLPSMLLSGFMFPFRGMPGWAQAVGEILPLTHFLRI 336

Query: 332 IQGFL----GLNQMAASWSTIAPKWTLLWAQAL 360
           ++G L    GL ++AA    +A   T++   AL
Sbjct: 337 VRGILLKGNGLAEIAAEVLALALFLTVVTVVAL 369