Pairwise Alignments

Query, 387 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., Domain of unknown function / Efflux ABC transporter, permease protein from Variovorax sp. SCN45

 Score =  185 bits (470), Expect = 2e-51
 Identities = 120/370 (32%), Positives = 187/370 (50%), Gaps = 15/370 (4%)

Query: 12  RQWTLLRHDKWLFSCLTWVPILLAVSIWWIFSQGIARDLPFGVVDFSHSQLSRQLIREVD 71
           R++ LLR   W  + ++WVP+L    IWWIFS G+   LP GV+D  HS LSRQL+R +D
Sbjct: 13  REFALLRTRPWDLAMISWVPLLAVFLIWWIFSAGLPERLPIGVLDQDHSSLSRQLVRFLD 72

Query: 72  ATSTLLVSQHFASVDEASQAMRSNQIYGFMVIPAQFDKAIYRQEQPQVTTFYNSQMILVG 131
           AT  L V Q ++   E ++A+ S  +   + +P    + + +    QV   +N+Q+    
Sbjct: 73  ATPGLRVVQQYSDEGEMARALTSGAVDAAVQLPRDLSRDVKQGRVGQVVLLHNAQLGTHS 132

Query: 132 KLVNSAVVQAQGTFNAQVDV-MKNLATKTHTTLAAMGRSVPVRTQITPLFNQNTNYAQFL 190
            L+   V  A  T +  V++ ++N   ++ T  AA     P++  +  LFN +T+Y QFL
Sbjct: 133 SLIQRDVRTAVATVSGGVELAVRNKRGESMT--AARVSMEPIKASMVALFNTSTDYEQFL 190

Query: 191 VSAIVPALWQITIVVSTILILAANYRHYGLKSWLAQSP-----LTQLTRTL-LPYLPIFM 244
            +A++PAL  I  + +    +    R   + +WL  +P     L  L   L LP+L +  
Sbjct: 191 GAALIPALLHILAMTAGAWAVGRELRDRSIGAWLGAAPRWHEALAALAGKLALPFLSLSA 250

Query: 245 LQGLGFLIWFYDVLRWPMFGHFSTLLLAQSITVVACVIMGAFFYFLTLDPARAMSFAGAF 304
           +  +  ++W      W   G     L A  + +   + +GAF   LT     A+S  G  
Sbjct: 251 V-AIAAMVWITAGRGWHPVGSLGWTLFALVVFLALSIALGAFASSLTRSLRTALSATGFI 309

Query: 305 TAPSFAFMGITFPASDMNTLAQAWRNLLPISHYIEVQVNQVSYGLEALSSLQPMVNMWGY 364
           TAP+FAF G+ FP   M   A+ W NLLP +HYI VQ+ Q+  G   L S+     +W  
Sbjct: 310 TAPAFAFGGVGFPLVAMPFFARMWANLLPYTHYIRVQMEQLQMGAPVLYSV--ATPLW-- 365

Query: 365 LLPLGLALLL 374
            + LG A+LL
Sbjct: 366 -MVLGTAVLL 374