Pairwise Alignments

Query, 387 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 376 a.a., Efflux ABC transporter, permease protein from Sphingobium sp. HT1-2

 Score = 52.0 bits (123), Expect = 3e-11
 Identities = 73/339 (21%), Positives = 122/339 (35%), Gaps = 32/339 (9%)

Query: 42  FSQGIARDLPFGVVDFSHSQLSRQLIREVDATSTLLVSQHFASVDEASQAMRSNQIYGFM 101
           +S  +A  +P  VVD   S  SR L+R + A     ++   AS   A   + +      +
Sbjct: 38  YSGEVAVRIPVAVVDLDDSGASRSLVRRIAALQQADLAARPASPGAARLWLETTGAGAVV 97

Query: 102 VIPAQFDKAIYRQEQPQVTTFYNSQMILVGKLVNSAVVQAQGTFNAQVDVMKNLATKTHT 161
           +IP  F++ I    Q  V  + N   +L      S +  A  T   +             
Sbjct: 98  IIPEGFERHILNGAQGTVALYGNGAYLLRSSTALSGIGLAVTTIAGEA-----------A 146

Query: 162 TLAAMGRSVPVRTQIT----PLFNQNTNYAQFLVSAIVPALWQITIVVSTILILAANYRH 217
           +  AM +  P R  ++    PLFN    Y     S + P +    +++   L++      
Sbjct: 147 SDQAMAQGAPARPALSLVQRPLFNTREGYG----STVFPGVG--FLIIHQTLLMGLTMLA 200

Query: 218 YGLKSWLAQSPLTQLTRTLLPYLPIFMLQG-------LGFLIWFYDVLRWPMFGHFSTLL 270
             L+  L +  L   +RTL+     F + G        GF+ WF D  R    G    L+
Sbjct: 201 ATLRETLGRFRLP--SRTLIGIALAFFVIGWADVAYYAGFVFWFQDYPR--AAGSPGALI 256

Query: 271 LAQSITVVACVIMGAFFYFLTLDPARAMSFAGAFTAPSFAFMGITFPASDMNTLAQAWRN 330
           +  S+ V A V        L     R +      +   F   G+++PA            
Sbjct: 257 VGGSLFVGATVAAALALASLFRTRERPLQLWMGTSLAIFFLAGLSWPAEATPAWLALLAR 316

Query: 331 LLPISHYIEVQVNQVSYGLEALSSLQPMVNMWGYLLPLG 369
           LLP +  I + V     G       + ++N+   +L  G
Sbjct: 317 LLPTTAGIHLMVGLNQMGASLAEQTREVLNLAILILVYG 355