Pairwise Alignments

Query, 387 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 916 a.a., Ribosome-associated ATPase RbbA from Sphingobium sp. HT1-2

 Score = 54.7 bits (130), Expect = 1e-11
 Identities = 73/341 (21%), Positives = 138/341 (40%), Gaps = 25/341 (7%)

Query: 49  DLPFGVVDFSHSQLSRQLIREVDATSTLLVSQHFASVDEASQAMRSNQIYGFMVIPAQFD 108
           +L + V+D  +S LS+    ++  +S  +        D+  + M+  ++   + IP  F 
Sbjct: 592 ELNYAVLDRDNSILSQNYALDISGSSYFVEHAPIRDYDDLDRRMKDGELALVIEIPPGFG 651

Query: 109 KAIYRQEQPQVTTFYNSQMILVGKLVNSAVVQAQGTFNAQVDVMKN--LATKTHTTLAAM 166
           + I    Q           + VG   + A  Q   T    +  +    L+ +     +A+
Sbjct: 652 RDIAAGRQ-----------VTVGAWFDGANPQRAETVQGYIQGLHQHWLSQQAAARGSAV 700

Query: 167 GRSVPVRTQITPLFNQNTNYAQFLVSAIVPALWQITIVVSTILILAANYRHYGLKSWLAQ 226
           G S  +  +    +N +      +V  ++P L  +   + T L +    +  G    L  
Sbjct: 701 GSSFSIENRYR--YNPDVQSLPAMVPIVIPLLLLMLPAMLTALAVVRE-KEIGSIINLYV 757

Query: 227 SPLTQ---LTRTLLPYLPIFMLQGLGFLIWFYDVLRWPMFGHFSTLLLAQSITVVACVIM 283
           +P+++   L    LPY+ + ++  L  ++    +   P+ G F TLLLA +I  V    M
Sbjct: 758 TPVSRSEFLLGKQLPYVVLALVNFLLMVLMAIFIFGVPVKGSFPTLLLAAAIYCVTATGM 817

Query: 284 GAFFYFLTLDPARAMSFAGAFT-APSFAFMGITFPASDMNTLAQAWRNLLPISHYIEVQV 342
           G     +T     AM  A   T  P+  + G+T P S M   A+   ++ P SH   +  
Sbjct: 818 GLLASAVTRSQIAAMFLAMIGTMIPATTYGGMTDPVSSMEGSARIIGDIYPASHMFTISR 877

Query: 343 NQVSYGL---EALSSLQPMVNMWGYLLPLGLALLLIRKHLA 380
              +  L   +   S  P+       L +G+A++L++K  A
Sbjct: 878 GVFAKALGFSDLAGSFLPLA--ISAPLIVGIAIMLLKKQEA 916