Pairwise Alignments

Query, 387 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 389 a.a., ABC-type multidrug transport system, permease component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 88.6 bits (218), Expect = 3e-22
 Identities = 72/318 (22%), Positives = 142/318 (44%), Gaps = 12/318 (3%)

Query: 42  FSQGIARDLPFGVVDFSHSQLSRQLIREVDATSTLLVSQHFASVDEASQAMRSNQIYGFM 101
           +S+   + +P  VVD   S +SRQ+ R V A   +   +    + EA   +  N+I G +
Sbjct: 48  YSRESVQQVPVAVVDQDLSAISRQITRYVAAHPAVDTQRVTPDLREAQDLLWKNEIAGVL 107

Query: 102 VIPAQFDKAIYRQEQPQVTTFYNSQMILVGKLVNSAVVQAQGTFNAQVDVMKNLATKTHT 161
           +IP   +  +    + +V    N   +++ K+  + + +A GT +A ++ +K LA  T +
Sbjct: 108 MIPQGLESKVLSGRRAEVDISGNGVYMMMNKVALNGLAEAVGTVSAGIE-LKRLAAGTPS 166

Query: 162 TLAAMGRSVPVRTQITPLFNQNTNYAQFLVSAIVPALWQITIVVSTILILAANYRHYGLK 221
              AM +  PV      LFN    Y  ++V  +   + Q T++++ I +L   +R  G  
Sbjct: 167 PAQAMAQRQPVNVNAVALFNVREGYGAYIVPGVAVLIIQQTLLLA-ITLLFGTWRERG-- 223

Query: 222 SWLAQSPLTQLTRTLLPYLPIFMLQGL---GFLIWFYDVLRWPMFGHFSTLLLAQSITVV 278
           ++  +         LL +  +     L   GF++W+ D   +P  G+F  LLL  ++  +
Sbjct: 224 AFPVRRSSAAYFGMLLAFATVAFANSLYFFGFVLWWQD---YPRAGNFGGLLLFAALFAL 280

Query: 279 ACVIMGAFFYFLTLDPARAMSFAGAFTAPSFAFMGITFPASDMNTLAQAWRNLLPISHYI 338
               +G     L     R++        P     G+++P   +    QA R L+P +  +
Sbjct: 281 CVAALGMLLGSLFRTRERSVQLLLCTALPFMFLSGLSWPVEALPPALQALRWLVPSTAGV 340

Query: 339 E--VQVNQVSYGLEALSS 354
           +  + +NQ+   L  +++
Sbjct: 341 QGFIALNQLGASLAQVAT 358