Pairwise Alignments

Query, 324 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 295 a.a., Membrane-fusion protein from Variovorax sp. SCN45

 Score = 63.5 bits (153), Expect = 6e-15
 Identities = 67/244 (27%), Positives = 97/244 (39%), Gaps = 53/244 (21%)

Query: 46  ISSKVPGRIDQVLVRKGDQVEKGQLIFTLLSPEIDAKLEQAIAGQKAAGALAQEAENGAR 105
           ++S+V G I Q+ VR+G  V +G L+  + + +IDA + QA AG                
Sbjct: 1   VASRVTGFIRQLDVREGQAVRRGDLLLRIDASDIDAAIAQARAG---------------- 44

Query: 106 EQQIQAAKDQWLKAQAAAELAEKTYLRVNNLYNDGVVSEQKRDEAQTQWQAAKYTESAAL 165
              +QAA++ W  AQ                                  Q A+   + A+
Sbjct: 45  ---VQAAQEAWRDAQHDVN------------------------------QNAQLVPAGAI 71

Query: 166 QMYQLAKEGAREETKQAALEKARMAAGAVAEVEAYAADTKIQSWFDGEVSQVLMHSGELA 225
               L K   REET +AALE+A+ A  A      Y     I S  DG V  V   SGE+A
Sbjct: 72  SADALRKSRVREETTRAALEQAQSALAAAQAQRNYVT---ITSPVDGVVVSVARRSGEMA 128

Query: 226 PQGFPVVTVVDTQDTWAVFNVREDLLKHFTQGAQFTAYLPAL-NKSIEFKVTHVAVMGDF 284
             G P++TV   +       V E  L     G      + AL ++ ++ +V  V   GD 
Sbjct: 129 APGAPLMTVESREVLLFKAFVPERSLAAVKAGDSIPVRIDALGDERLKGRVRGVVPSGDG 188

Query: 285 ATWR 288
            T R
Sbjct: 189 VTRR 192