Pairwise Alignments

Query, 324 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 328 a.a., Membrane-fusion protein from Variovorax sp. SCN45

 Score =  287 bits (735), Expect = 2e-82
 Identities = 150/327 (45%), Positives = 221/327 (67%), Gaps = 5/327 (1%)

Query: 1   MKTVKTT--LMTLTAVAVVGWIGYRFYQAYQPEPVTLQGQIESQQYSISSKVPGRIDQVL 58
           M + KT   +  L A+ V+  + + F++A QP P   QGQ+E+++  ++ KV  R+ +V 
Sbjct: 1   MMSAKTRKLIAILVALLVLALLVWGFWRASQPAPEVFQGQMEARETDVAGKVTARVAEVA 60

Query: 59  VRKGDQVEKGQLIFTLLSPEIDAKLEQAIAGQKAAGALAQEAENGAREQQIQAAKDQWLK 118
           V++GD+++ G ++  + SPE+ AKL QA A ++AA A+A++A+NGAR Q+++ A+ QW +
Sbjct: 61  VKEGDRIQAGAVLVRMDSPEVRAKLAQATAAEQAAQAVAEKAQNGARPQEVEMARMQWQR 120

Query: 119 AQAAAELAEKTYLRVNNLYNDGVVSEQKRDEAQTQWQAAKYTESAALQMYQLAKEGAREE 178
           A+ AA+LA+ ++ RV+ L  +G+V++QKRDEA+  W+A++    AA   Y +A+ GAR E
Sbjct: 121 AETAAQLAQTSFRRVDGLAREGLVADQKRDEAEANWKASRDAAIAAKAQYDMARTGARPE 180

Query: 179 TKQAALEKARMAAGAVAEVEAYAADTKIQSWFDGEVSQVLMHSGELAPQGFPVVTVVDTQ 238
            K AA  +AR  AG VAE +A  A+T+++S   GEV++VL   GEL+PQG  VVTVVD  
Sbjct: 181 DKAAASAQARQVAGVVAEAKAAKAETELRSPVGGEVAKVLAKVGELSPQGVAVVTVVDLN 240

Query: 239 DTWAVFNVREDLLKHFTQGAQFTAYLPAL---NKSIEFKVTHVAVMGDFATWRSTDATQG 295
           D W V NVRED L  F  G +F A LPAL    ++  FKV + AV+ DFATWR+T    G
Sbjct: 241 DQWVVLNVREDRLSRFALGNEFDARLPALPEGKRTARFKVYYSAVLPDFATWRATRGGAG 300

Query: 296 FDLRTFEVEARPVTPTEGLRMGMSVVV 322
           FD+RTFEV ARP+ P +G R GMSV+V
Sbjct: 301 FDVRTFEVRARPLKPIDGARPGMSVLV 327