Pairwise Alignments

Query, 324 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 321 a.a., Efflux RND transporter periplasmic adaptor subunit from Pseudomonas protegens RBAN4

 Score = 75.1 bits (183), Expect = 2e-18
 Identities = 76/306 (24%), Positives = 136/306 (44%), Gaps = 31/306 (10%)

Query: 8   LMTLTAVAVVGWIGYRFYQAYQPEPVTL-QGQIESQQYSISSKVPGRIDQVLVRKGDQVE 66
           L+ L A    G+  ++  Q   PE +++  G++E+ +  I+SK+PGR+ +V V +GD+V 
Sbjct: 16  LILLLAAGAFGY--WKSLQDRLPEGLSMGNGRLEATEVQIASKIPGRLAEVRVNEGDKVL 73

Query: 67  KGQLIFTLLSPEIDAKLEQAIAGQKAAGALAQEAENGAREQQIQAAKDQWLKAQAAAELA 126
           +GQL+  + +  ++A+  QA            EAE     + + AA+      Q+   LA
Sbjct: 74  QGQLLARMDTRTLEAQRNQA------------EAEVLRARENLSAAEANVQLRQSELLLA 121

Query: 127 EKTYLRVNNLYNDGVVSEQKRDEAQTQWQAAKYTESAALQMYQLAKEGAREETKQAALEK 186
            +   R   L+  G  S+Q  D+ Q +         AA             + + AA++ 
Sbjct: 122 NQELRRSQELFKRGFASQQIIDQQQARLNTGNAAVLAA-------------QAQVAAVKA 168

Query: 187 ARMAAGA-VAEVEAYAADTKIQSWFDGEVSQVLMHSGELAPQGFPVVTVVDTQDTWAVFN 245
           A  AA A VA++ +   D+ +++  DG +   L   GE+   G  V+ ++D  D +    
Sbjct: 169 AIGAAQAQVAQLTSEIDDSSLRAPIDGIIQLRLAEPGEVLGAGGRVLLLIDPNDQYMNLY 228

Query: 246 VREDLLKHFTQGAQFTAYLPAL-NKSIEFKVTHVAVMGDFATWRSTDATQGFDLRTFEVE 304
           +   +    T G +    L AL N+ +  K++ VA    F T +  +         F V+
Sbjct: 229 LPASVTGRLTVGDESRILLDALPNQPLPAKISFVAAKSQF-TPKEVETRDERQKLVFRVK 287

Query: 305 ARPVTP 310
            R   P
Sbjct: 288 VRLTQP 293