Pairwise Alignments

Query, 324 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 342 a.a., secretion protein HlyD from Pectobacterium carotovorum WPP14

 Score =  105 bits (263), Expect = 1e-27
 Identities = 90/326 (27%), Positives = 148/326 (45%), Gaps = 12/326 (3%)

Query: 5   KTTLMTLTAVAVVGWIGYRFY--QAYQPEPVTLQGQIESQQYSISSKVPGRIDQVLVRKG 62
           K  L     V ++   GY FY  Q  Q +P+TL G I+ +  +++ +V GR+ ++ V +G
Sbjct: 3   KRKLAFAALVLILLGAGYGFYHHQKQQEKPLTLYGNIDIRTVNLAFRVGGRVAELNVDEG 62

Query: 63  DQVEKGQLIFTL-LSPEIDAKLEQAIAGQKAAGALAQEAENGAREQQIQAAKDQWLKAQA 121
           D V+ GQ + TL  +P ++A+  QA A   +A A  Q A+ G R+++I   + Q +++QA
Sbjct: 63  DAVQAGQPLATLDAAPYLNAQ-NQAQANLASAQAQLQLAQEGYRQEEIAQVRSQVVQSQA 121

Query: 122 AAELAEKTYLRVNNLYNDGVVSEQKRDEAQTQWQAAKYTESAALQMYQLAKEGAREETKQ 181
           A + A   Y R   L++   +S    D+A+T    A  T  AA       + G R +   
Sbjct: 122 AYDYANSFYQRQQGLWDKRAISANMLDDARTTRNQALATLQAAKDKLSQFESGNRPQEIA 181

Query: 182 AALEKARMAAGAVAEVEAYAADTKIQSWFDGEVSQVLMHSGELAPQGFPVVTVVDTQDTW 241
           AA      A   +A+ E    D ++ +   G +       G +   G  V T+  T+  W
Sbjct: 182 AAQAAVAQAEAGLAQAELNKQDAELLAPSPGVILTRAAEKGSMLASGSTVFTLSLTRPVW 241

Query: 242 AVFNVREDLLKHFTQGAQFTAYLPAL-NKSIEFKVTHVAVMGDFATWRSTDATQGFDLRT 300
               V E  L     G+Q   Y     N+    KV  V+   +F    +  + +  DLRT
Sbjct: 242 VRAYVSEKDLGRVVPGSQMLIYTDGRPNQPYRGKVGFVSPSAEF----TPKSVETEDLRT 297

Query: 301 ---FEVEARPVTPTEGLRMGMSVVVK 323
              + +      P +GLR GM V ++
Sbjct: 298 DLVYRLRIVVTDPDDGLRQGMPVTLR 323