Pairwise Alignments

Query, 324 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., efflux RND transporter periplasmic adaptor subunit from Pectobacterium carotovorum WPP14

 Score = 59.7 bits (143), Expect = 1e-13
 Identities = 72/300 (24%), Positives = 120/300 (40%), Gaps = 74/300 (24%)

Query: 27  AYQPEPVTLQGQIESQQYSISS-KVPGRIDQVLVRKGDQVEKGQLIFTLLSPEIDAKLEQ 85
           A   EPV+L G+I   + ++   ++ GR+   LV  G  V++G +I TL           
Sbjct: 42  AMNREPVSLTGEIRPHEETVLGFRLDGRVLNRLVDVGASVKRGDVIATLD---------- 91

Query: 86  AIAGQKAAGALAQEAENGAREQQIQAAKDQWLKAQAAAELAEKTYLRVNNLYNDGVVSEQ 145
                      A+++EN     Q+++A+     A +A  LA+  + R+  L   G ++  
Sbjct: 92  -----------ARDSEN-----QLRSAQADLASAASAERLAKSNFSRMKALAPGGAIARV 135

Query: 146 KRDEAQTQWQAAKYTESAALQMYQLAKEGAREETKQAALEKARMAAGAVAEVEAYAADTK 205
           + DEAQ  W AA     +A    Q   +GA+E      L  A+                 
Sbjct: 136 QLDEAQANWDAAVSRRESA----QATVKGAQERLSYTQLTAAQ----------------- 174

Query: 206 IQSWFDGEVSQVLMHSGELAPQGFPVVTVVDTQDTWAVFNVREDLLKHFTQGAQFTAYLP 265
                DG ++ V ++ G++   G  VV +       AVF+V E L               
Sbjct: 175 -----DGVITTVSVNPGQVVSAGQEVVRLASLDGRDAVFDVPERL--------------- 214

Query: 266 ALNKSIEFKVTHVAVMGD---FATWRSTDATQGFD--LRTFEVEARPVTPTEGLRMGMSV 320
            +N S+  +V  V+++ +    A  R  D +   D   RTF V     +P   + +G SV
Sbjct: 215 -VNPSLPSRVIRVSLLSEPSVQAEGRVRDISPQADPVTRTFRVRVTLTSPPAAMVLGASV 273