Pairwise Alignments

Query, 324 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 323 a.a., efflux RND transporter periplasmic adaptor subunit from Serratia liquefaciens MT49

 Score =  164 bits (416), Expect = 2e-45
 Identities = 108/326 (33%), Positives = 178/326 (54%), Gaps = 21/326 (6%)

Query: 2   KTVKTTLMTLTAVAVVGWIGYRFYQAYQPEPVTLQGQIESQQYSISSKVPGRIDQVLVRK 61
           KT+ T L+ + A+A+   I +R +     + + LQG++++ +  ++SK  GR+ + LV +
Sbjct: 4   KTLFTLLLMVVAIAMA--ILFRAHN----QDLLLQGEVDAPEVIVASKAKGRVIERLVER 57

Query: 62  GDQVEKGQLIFTLLSPEIDAKLEQAIAGQKAAGALAQEAENGAREQQIQAAKDQWLKAQA 121
           GD V+ GQ++  L SPE+ A+L  A A +  A A  +++ +G RE+ I+  +    +++A
Sbjct: 58  GDDVQAGQVMIHLDSPELMAQLRSAQASRDEAKAQLEQSLHGTREESIRNLRANLAQSEA 117

Query: 122 AAELAEKTYLRVNNLYNDGVVSEQKRDEAQTQWQAAKYTESAALQMYQLAK-------EG 174
               A+  Y R  ++   G +S+ + D       A++     A Q  Q AK        G
Sbjct: 118 QYRNAQNDYNRNLSVAGKGYISKSELD-------ASRRARDTAFQQVQAAKANLDEGING 170

Query: 175 AREETKQAALEKARMAAGAVAEVEAYAADTKIQSWFDGEVSQVLMHSGELAPQGFPVVTV 234
            R E +Q      R A   + +V+A   D ++ +   GEV  +    GEL   G P++T+
Sbjct: 171 DRVELRQQYAAALRAAEENLLQVKAQTDDLQVLAPVTGEVGPIPAEVGELLNAGSPLLTL 230

Query: 235 VDTQDTWAVFNVREDLLKHFTQGAQFTAYLPAL-NKSIEFKVTHVAVMGDFATWRSTDAT 293
           +   D + VFN+RED+L H  +G +    +PAL +K IE +V ++A +GD+AT R+T AT
Sbjct: 231 IRIPDAYFVFNLREDILAHVRKGDKVQMRVPALKDKMIEAEVRYIAPLGDYATKRATRAT 290

Query: 294 QGFDLRTFEVEARPVTPTEGLRMGMS 319
             FDL+TFEV   P  P +GLR GMS
Sbjct: 291 GDFDLKTFEVRLYPSQPVDGLRPGMS 316