Pairwise Alignments

Query, 324 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 343 a.a., predicted membrane fusion protein of efflux pump (NCBI) from Escherichia coli BW25113

 Score = 70.5 bits (171), Expect = 6e-17
 Identities = 69/251 (27%), Positives = 108/251 (43%), Gaps = 7/251 (2%)

Query: 32  PVTLQGQIESQQYSISSKVPGRIDQVLVRKGDQVEKGQLIFTLLSPEIDAKLEQAIAGQK 91
           P T      +    +  +V GRI ++ V     V++G L+F +     +A L +A A   
Sbjct: 37  PSTNDAYASADTIDVVPEVSGRIVELAVTDNQAVKQGDLLFRIDPRPYEANLAKAEASLA 96

Query: 92  AAGALAQEAENGAREQQIQAAKDQWL--KAQAAAELAEKTYLRVNNLYNDGVVSEQKRDE 149
           A        +     QQ  A        KA+AAA+ A  T  R   L  +G VS +  D 
Sbjct: 97  ALDKQIMLTQRSVDAQQFGADSVNATVEKARAAAKQATDTLRRTEPLLKEGFVSAEDVDR 156

Query: 150 AQTQWQAAKYTESAALQMYQLAKEGAREETKQAALEKARMAAGA-VAEVEAYAADTKIQS 208
           A+T  +AA+   +A L   Q A   A   +   AL   R A  A +A  + +     +++
Sbjct: 157 ARTAQRAAEADLNAVLLQAQSA---ASAVSGVDALVAQRAAVEADIALTKLHLEMATVRA 213

Query: 209 WFDGEVSQVLMHSGELAPQGFPVVTVVDTQDTWAVFNVREDLLKHFTQGAQFTAYLPA-L 267
            FDG V  +    G+ A    P+ T++DT+  + + N RE  LK+   G   T  L +  
Sbjct: 214 PFDGRVISLKTSVGQFASAMRPIFTLIDTRHWYVIANFRETDLKNIRSGTPATIRLMSDS 273

Query: 268 NKSIEFKVTHV 278
            K+ E KV  +
Sbjct: 274 GKTFEGKVDSI 284