Pairwise Alignments

Query, 324 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 285 a.a., putative membrane protein (VIMSS) from Escherichia coli BW25113

 Score = 58.5 bits (140), Expect = 2e-13
 Identities = 66/280 (23%), Positives = 116/280 (41%), Gaps = 58/280 (20%)

Query: 1   MKTVK--TTLMTLTAVAVVGWIGYRFYQAYQPEPVTLQGQIESQQYSISSKVPGRIDQVL 58
           +KT+K  +T++      + GW  + +Y      P T  G+I ++Q SI+ +V GRI ++ 
Sbjct: 3   IKTIKYFSTIIVAVVAVLAGWWLWNYYMQ---SPWTRDGKIRAEQVSITPQVSGRIVELN 59

Query: 59  VRKGDQVEKGQLIFTLLSPEIDAKLEQAIAGQKAAGALAQEAENGAREQQIQAAKDQWLK 118
           ++    V  G L+ T+                       Q AE  A   Q Q AK Q   
Sbjct: 60  IKDNQLVNAGDLLLTIDKTPF------------------QIAELNA---QAQLAKAQSDL 98

Query: 119 AQAAAELAEKTYLRVNNLYNDGVVSEQKRDEAQTQWQAAKYTESAALQMYQLAKEGAREE 178
           A+A  E   + +L  N       +S ++ D A    +A + +  AA              
Sbjct: 99  AKANNEANRRRHLSQN------FISAEELDTANLNVKAMQASVDAA-------------- 138

Query: 179 TKQAALEKARMAAGAVAEVEAYAADTKIQSWFDGEVSQVLMHSGELAPQGFPVVTVVDTQ 238
             QA L++A+             A T+I++   G V+ +    G+ A  G P+  +VD+ 
Sbjct: 139 --QATLKQAQW----------QLAQTEIRAPVSGWVTNLTTRIGDYADTGKPLFALVDSH 186

Query: 239 DTWAVFNVREDLLKHFTQGAQFTAYLPALNKSIEFKVTHV 278
             + +    E  L+H  +GA     L + NK+++  V+ +
Sbjct: 187 SFYVIGYFEETKLRHIREGAPAQITLYSDNKTLQGHVSSI 226