Pairwise Alignments

Query, 324 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 331 a.a., Multidrug resistance efflux pump from Enterobacter asburiae PDN3

 Score = 92.0 bits (227), Expect = 2e-23
 Identities = 84/321 (26%), Positives = 138/321 (42%), Gaps = 11/321 (3%)

Query: 8   LMTLTAVAVVGWIGYRFYQAYQPEPVTLQGQIESQQYSISSKVPGRIDQVLVRKGDQVEK 67
           ++ L A  V GW+   +YQ++Q + +TL G ++ +  ++S +V GR+  + V +GD ++ 
Sbjct: 11  VVVLLAAGVGGWL---WYQSHQDKGLTLYGNVDIRTVNMSFRVGGRLASLSVDEGDAIKS 67

Query: 68  GQLIFTLLSPEIDAKLEQAIAGQKAAGALAQEAENGAREQQIQAAKDQWLKAQAAAELAE 127
           GQ +  L     +  L QA AG   A A       G R+++I  A     +AQAA + A+
Sbjct: 68  GQTLGMLDKAPYENALLQAKAGVSVAQAQYDLMLAGYRDEEIAQAAAAVKQAQAAYDYAQ 127

Query: 128 KTYLRVNNLYNDGVVSEQKRDEAQTQWQAAKYTESAALQMYQLAKEGAREETKQAALEKA 187
             Y R   L+    +S    + A++    A+ T  +A         G R +    A    
Sbjct: 128 NFYARQQGLWKSRTISANDLENARSSRDQAQATLKSAQDKLSQYHTGNRPQDIAQAKASL 187

Query: 188 RMAAGAVAEVEAYAADTKIQSWFDGEVSQVLMHSGELAPQGFPVVTVVDTQDTWAVFNVR 247
             A   +A+ E    DT + +  DG +    +  G +   G  V+T+  T+  W    V 
Sbjct: 188 EQAQAQLAQAELDLHDTTLIAPSDGMLMTRAVEPGSMLSAGSTVLTLSLTRPVWVRAYVD 247

Query: 248 EDLLKHFTQGAQFTAYLPAL-NKSIEFKVTHVAVMGDFATWRSTDATQGFDLRTFEVEAR 306
           E  L     G +   Y     +K    KV  V+   +F    +    +  DLRT  V   
Sbjct: 248 EPNLGQMQPGRELLLYTDGRPDKPYHGKVGFVSPTAEF----TPKTVETPDLRTDLVYRL 303

Query: 307 PVTPT---EGLRMGMSVVVKL 324
            +  T   + LR GM V VK+
Sbjct: 304 RIIVTDADDALRQGMPVTVKV 324