Pairwise Alignments

Query, 324 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 343 a.a., multidrug efflux transporter periplasmic adaptor subunit MdtN from Escherichia coli ECRC101

 Score = 70.9 bits (172), Expect = 4e-17
 Identities = 68/251 (27%), Positives = 109/251 (43%), Gaps = 7/251 (2%)

Query: 32  PVTLQGQIESQQYSISSKVPGRIDQVLVRKGDQVEKGQLIFTLLSPEIDAKLEQAIAGQK 91
           P T    + +    +  +V GRI ++ V     V++G L+F +     +A L ++ A   
Sbjct: 37  PSTNDAYVSADTIDVVPEVSGRIVELAVTDNQAVKQGDLLFRIDPRPYEANLAKSEASLA 96

Query: 92  AAGALAQEAENGAREQQIQAAKDQWL--KAQAAAELAEKTYLRVNNLYNDGVVSEQKRDE 149
           A        +     QQ  A        KA+AAA+ A  T  R   L  +G VS +  D 
Sbjct: 97  ALDKQIMLTQRSVDAQQFGADSVNATVEKARAAAKQATDTLRRTEPLLKEGFVSAEDVDR 156

Query: 150 AQTQWQAAKYTESAALQMYQLAKEGAREETKQAALEKARMAAGA-VAEVEAYAADTKIQS 208
           A+T  +AA+   +A L   Q A   A   +   AL   R A  A +A  + +     +++
Sbjct: 157 ARTAQRAAEADLNAVLLQAQSA---ASAVSGVDALVAQRAAVEADIALTKLHLEMATVRA 213

Query: 209 WFDGEVSQVLMHSGELAPQGFPVVTVVDTQDTWAVFNVREDLLKHFTQGAQFTAYLPA-L 267
            FDG V  +    G+ A    P+ T++DT+  + + N RE  LK+   G   T  L +  
Sbjct: 214 PFDGRVISLKTSVGQFASAMRPIFTLIDTRHWYVIANFRETDLKNIRSGTPATIRLMSDS 273

Query: 268 NKSIEFKVTHV 278
            K+ E KV  +
Sbjct: 274 GKTFEGKVDSI 284